VMD (Visual Molecular Dynamics) is designed for the visualization and analysis of biological systems such as proteins, nucleic acids, lipid bilayer assemblies, etc. It may be used to view more general molecules, as VMD can read standard Protein Data Bank (PDB) files and display the contained structure. VMD provides a wide variety of methods for rendering and coloring a molecule: simple points and lines, CPK spheres and cylinders, licorice bonds, backbone tubes and ribbons, cartoon drawings, and others. VMD can be used to animate and analyze the trajectory of a molecular dynamics (MD) simulation. In particular, VMD can act as a graphical front end for an external MD program by displaying and animating a molecule undergoing simulation on a remote computer. VMD uses OpenGL and OpenGL Programmable Shading Language for high performance rendering of large structures.
Elvis is a clone of vi/ex, the standard UNIX editor. Elvis supports nearly all of the vi/ex commands, in both visual mode and ex mode. Elvis adds support for multiple files, multiple windows, a variety of display modes including "hex" and "html", on-line help, WYSIWYG printing, and other miscellaneous extensions.
GNU Make examines the timestamps on a set of interdependent files, and, if necessary, issues commands to bring them up-to-date. The user creates a makefile describing the files, their relationships, and the commands to run. Most often make is used to rebuild libraries and programs when their sources are changed, but it can be used for any situation where one set of files needs to be generated from another set.
vile is a text editor which is extremely compatible with vi. It has extended capabilities in many areas, including multi-file editing and viewing, mouse support, infinite undo, additional operators, and rectangular operations. Vile has an optional Perl interface for UNIX and NT. It can also be built as "xvile", which is fully X-aware, or "winvile" for Win32, with scrollbars, menus, etc.
KVirc is a Visual Internet Relay Chat Client based on the Qt library. Features include a MDI user interface, drag & drop, built-in scripting language (aliases, popups and events), customizable backgrounds and colours, DCC (chat, send with resume, voice), CTCP functions, mIRC colour support with preview, notify list, online help and configurable logging.
Spong is a simple system-monitoring package. It features client-based monitoring (CPU, disk, processes, logs, etc.), monitoring of network services, grouping of hosts (routers, servers, workstations, and PCs), host-specific contact and downtime information, configuration on a client-by-client basis, results displayed via the Web, history of problems, messaging (via email or pager) when problems occur, and verbose information to help diagnosis problems. It communicates via simple TCP-based messages, and is written in Perl.
g2 is an easy to use, portable and powerful 2D graphics library. It provides a comprehensive set of functions for simultaneous generation of graphical output on different types of devices. The following devices are currently supported: Postscript, X11, FIG (xfig), PNG, and JPEG using the gd library, and Win32. g2 is written in C (ANSI) and additionally has Fortran, Perl, and Python interfaces.