PDB2PQR is a Python software package that automates many of the common tasks of preparing structures for continuum electrostatics calculations, providing a platform-independent utility for converting protein files in PDB format to PQR format. These tasks include adding a limited number of missing heavy atoms to biomolecular structures, determining side-chain pKas, placing missing hydrogens, optimizing the protein for favorable hydrogen bonding, assigning charge and radius parameters from a variety of force fields.
ngIRCd is a portable IRC daemon written from scratch. It is easy to configure, supports server links (even with original ircds) and runs on hosts with changing IP addresses (such as dial-in networks). Currently supported platforms are AIX, A/UX, Darwin/Mac OS X, FreeBSD, HP-UX, IRIX, Linux, NetBSD, SunOS/Solaris, and Windows with Cygwin.
Webfwlog is a Web-based firewall log reporting and analysis tool. It allows users to design reports to use on logged firewall data in whatever configuration they desire. Included are sample reports as a starting point. Reports can be sorted with a single click, or "drilled-down" all the way to the packet level, and saved for later use. Supported log formats are netfilter, ipfilter, ipfw, ipchains, Cisco routers, Snort, and Windows XP. Netfilter support includes ulogd MySQL or PostgreSQL database logs using the iptables ULOG or NFLOG target.
Tol is a programming language dedicated to the world of statistics and focused on time series analysis and stochastic processes. Unlike many other languages, Tol is not an object-oriented language, but a declarative language driven by functions, based on two key features: simple syntactical rules and a powerful set of extensible data types.
Firekeeper is an intrusion detection and prevention system for Firefox. It is able to detect, block and warn the user about malicious sites. Firekeeper uses flexible rules similar to Snort ones to describe browser-based attack attempts. Rules can also be used to effectively filter different kinds of unwanted content.
Tux Strikes Back is a level set (new world) for SuperTux 0.1.3, the popular open source jump'n run game which is available for many different platforms. This set comes with 18 new levels and its own world map and story. An installation of SuperTux 0.1.3 (Milestone 1) is required.
Card Monsters lets you play a creatures, instants, and sorceries. You to play the game against a computer-controlled opponent. Currently there are over 300 cards, and you can play in constructed, sealed, and draft mode. The program can automatically download all of the card pictures. The GUI is basic but very usable.