The Structural Proteomics Application Development Environment (SPADE) provides a community suite for developing and sharing protein structure and sequence tools. It includes a custom molecular viewer, sequence alignment editor, many reusable tools, and a chemical probing suite to support experimental verification of predicted structural models.
Ccide reads C, C++, BASIC, or bash source code containing embedded decision tables from stdin, expands the tables, copies the remaining statements, and forms a compilable C or C++ source module, executable bash script, or interpretable BASIC program. Erratic side effects are avoided by evaluating all condition expressions at exactly the same time, and by performing all evaluations and actions in the original sequence.
The FILTR (File Inventory for Loading, Transfer, and Recovery) automates CVS functions for personal use, allowing a user to maintain a watch on any directory, mirroring it in an intermediate working directory and taking care of all import, add, delete, and update calls to the CVS repository. No changes or additions are made to the directory under watch. The user can revert a watched directory to any previous saved state with a button click, or call up one or several past versions of a file. Groups can also make use of the same repository for file sharing.
Pathogen Warrior is a puzzle game about matching 3D model structures with a 2D hexagon map. It was one of the entrants to the 4th Ludum Dare 48-hour game development competition. The theme of the competition was "Infection". In Pathogen Warrior, the player's task is to match rotating 3D pathogen structures with a 2D model using a hexagon map. The time to accomplish the task is limited, and after successfully completing one pathogen, the player is advanced to next level, which has a more challenging pathogen.
mod_auth_pubtkt is a simple Web single sign-on (SSO) solution for Apache. It validates authentication tickets provided by the client in a cookie using public-key cryptography (DSA or RSA). Thus, only the login server that generates the tickets needs to possess the private key, while Web servers can verify tickets given only the public key. The implementation of the login server is left to the user, but an example and a library in PHP are provided with the distribution.
myFriends is a small program for all of you who have an Apache WEB server and mySQL database running. It is an address list using a WEB interface. It maintains similar things to most address book tools, as well as family relationships. It will also store any number of dates, binary flags or plain text notes to each name. This version targets anyone who wishes to use a simple system and provides a starting point for learning these technologies.
demexp is a client/server system for direct democracies. It makes it possible to ask questions in the system, add new answers to those questions, and vote on proposed answers. The voting procedure used is Condorcet voting. Questions are classified, and a delegation system allows one's vote for certain questions to be assigned to a chosen delegate. The software is tailored to the needs of the Democratic Experience project.
Genomorama is a software program for interactively displaying multiple genomes. It provides a powerful yet easy to use interface that leverages the visualization power of modern computers (via OpenGL) and the substantial bioinformatic infrastructure provided by the NCBI (via the NCBI C toolkit). Genomorama is written in portable, highly optimized C++ and comes in three "flavors" that allow it to run natively on (most) modern operating systems: OS X (using Carbon), Microsoft Windows (using MFC), and Linux (using Motif). Executables and source code are freely provided for all flavors.
JLearnIt is a thematic dictionary that allows you to learn vocabulary with a questionnaire. You can also translate text (word by word), search for incomplete words, sort the languages in alphabetical order, rearrange the order of the languages, save your score, save as HTML, and show only the languages you're interested in. Each word is rated according to frequency of use. You can choose to see only the words of a certain range of frequencies or to be asked for words of that level. You can also add and delete your vocabulary and categories, and cut/copy/paste between a spreadsheet program and JLearnIt. You can change the language and the skin of JLearnIt. You can get more information about the word on the Internet and save your configuration. JLearnIt won't ask you the same word if you know the word. It won't ask you for the word that starts with the same letters as the translation. You can edit words and set properties for this word.