pdf2htmlEX renders PDF files in HTML. It aims to provide an accurate rendering while being optimized for Web display. It is designed for scientific papers with complicated formulas and figures, so a precise rendering is the first concern, but general PDF files are also supported.
iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.
Treba is a commandline tool for training, decoding, and calculating with weighted (probabilistic) finite state automata (WFSA/PFSA). Training algorithms include Baum-Welch (EM), Viterbi training, and Baum-Welch augmented with deterministic annealing. Treba is optimized for speed and numerical stability, and training algorithms can be run multi-threaded on hardware with multiple cores/CPUs. Forward, backward, and Viterbi decoding are supported. Automata for training/decoding are read from a text file, or can be generated randomly or with uniform transition probabilities with different topologies (ergodic or fully connected, Bakis or left-to-right, or deterministic). Observations used for training or decoding are read from text files compatible with AT&T finite state tools and OpenFST.
GloboNote is a desktop note taking application. It helps you to create to-do lists, reminders, and other notes in one place. There is no limit in the number of sticky notes you can create. Notes can be organized by groups and searched using the search tool. You can format a note's text, change its color, font, size, and transparency level. You can make a note sticky by setting it to always stay on top, or hide or roll-up a note when not use. You can set alarms, play custom alarm sounds (WAV, MP3, AIFF, and AU), attach files, insert images, and more.
easy-rsa is a small RSA key management package based on the OpenSSL command line tool. While it is primary concerned with key management for the SSL VPN application space, it can also be used for building Web certificates. It was originally included as part of OpenVPN, but is now a separate project.