MetaPath is a tool for the analysis of metabolic pathways and associated visualization of experimental data. Built on the MetaCyc database, it provides an interactive map in which multiple pathways can be simultaneously visualized. Multiple annotations from the MetaCyc database are available, including synonyms, associated reactions and pathways, and database unification links. Metabolomics change data can be imported via simple CSV formats for visualization on targeted pathways. Pathways can be mined and removed algorithmically to identify key regulated pathways within a given dataset, providing a simper route to metabolic functions.
sydep is a tool for simple deployment over rsync. In combination GIT it is very powerful instrument. It provides three actions: init, push, and pull. init creates config files for sydep in the current directory. These are sydep.cfg, which contains connection details, and .sydepignore, which specifies files to ignore. push uploads files from the working directory to the server. pull downloads existing files from the server. It downloads only those files which are already in the working directory.