Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.
MUSCLE (Multi User Server Client Linking Environment) is an N-way messaging server and networking API. It includes client-side networking APIs for various languages, including C, C++, C#, Delphi, Java, and Python. MUSCLE lets programs communicate over a network via streams of serialized Message objects. The included server program ("muscled") lets its clients message each other and store information in its server-side hierarchical database. The database supports flexible queries via hierarchical wildcarding, and "live" updates via a subscription mechanism.
joeq is a Java 2 (JDK 1.3 and 1.4) compatible virtual machine. It is unique in that it is entirely implemented in Java, leading to greater reliability, portability, maintainability, and efficiency. It is also language-independent, so code from any supported language can be seamlessly compiled, linked, and executed dynamically.
OpenIsis provides a library and tools to access CDS/ISIS databases, which are mostly used for bibliographic data (ISO2709, Z39.50) but also well suited for other catalogues due to the very flexible indexing mechanism. Based on a C library, there are also bindings for Perl and Java (Tcl to come).
The Oculus Layout System supplies a Java layout API, and an easy-to-use visual builder, which works with both Swing and AWT. Main features include a proprietary stretching model, which enables the system to automatically infer how to properly stretch almost any user interface, and a cursor-based layout paradigm which dramatically improves the readability and maintainability of the layout code.