Log4php is a PHP port of Log4j, the most popular Java logging framework. It supports configuration through XML and properties files (with the same structure as log4j) and custom Configurators. File, RollingFile, DailyFile, Echo, Console, Mail, PEAR::Db, PHP error, Syslog or NT events, and socket appenders are supported. Simple, TTCC, Pattern, Html, and Xml Layouts are supported. It also supports Filters, custom Levels, and Loggers. Internal debugging can be switched on and off. Log4php can be used inside a class or inside a main/sub function.
The mission of the Apache Portable Runtime (APR) project is to create and maintain software libraries that provide a predictable and consistent interface to underlying platform- specific implementations. The primary goal is to provide an API to which software developers may code and be assured of predictable if not identical behaviour regardless of the platform on which their software is built, relieving them of the need to code special-case conditions to work around or take advantage of platform-specific deficiencies or features.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
ProteomeCommons.org Java Analysis Framework is a framework for referencing common mass spectrometry data such as atoms and residues. This framework provides a programmer with an easy-to-use library for writing programs that rely on common mass spectrometry data. The framework also contains utilities such as an isotope calculator and a reference for residue abbreviations.
The svnmailer is a tool that is usually called by a subversion hook to submit commit notifications in various ways (at the moment: mail via SMTP or a pipe to a sendmail like program, news via NNTP, or CIA live tracker notification via XML-RPC). It is derived from the original mailer.py distributed with subversion, but should be much more consistent, more extensible, and have many more features.