The Chemistry Development Kit (CDK) is a library of Java classes for chemo-, bioinformatics, computational chemistry, and chemometrics. It provides important algorithms like substructure search, SMILES, Gasteiger charges, QSAR descriptor calculation, 3D structure generation, 2D layout and rendering, many IO formats, atom typing, and more.
Visual Paradigm for UML is a Unified Modeling Language (UML) design tool that supports all UML diagrams, SysML diagrams, and entity relationship diagrams. Visual Paradigm for UML provides extensive use case modeling features, including full function UML use case diagram, flow of events editor, use case/actor grid, and activity diagram generation. Visual Paradigm for UML produces system documentation in PDF, HTML, and MS Word formats. A developer can design system documentation with the template designer. A system analyst can estimate the consequences of changes with impact analysis diagrams, such as matrix and analysis diagram. Visual Paradigm for UML generates Java code.
GRAL is a library for creating high quality plots and charts in Java. Many plot types are available like scatter plot, bubble plots, line plots, area plots, pie charts, and bar charts. Additionally, GRAL can exchange and process data (smoothing), and various plug-ins allow the import and export of data and graphics to formats like CSV, JPEG, PNG, EPS, PDF, or SVG.
VectorGraphics2D can export Java painting operations to Encapsulated PostScript (EPS), Scalable Vector Graphics (SVG), or Portable Document Format (PDF) files. It supports the rendering of all geometric shapes provided by the Java language. More advanced features like transparency or clipping paths can be used as well. It has a very small footprint and can be easily used as a replacement for Java's java.awt.Graphics2D class.
Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.
SDE for NetBeans is a UML modeling environment tightly integrated with NetBeans. It lets you draw all types of UML diagrams (use case diagram, class diagram, sequence diagram, activity diagram, etc.) in NetBeans, reverse source code (Java, C++, XML, XML Schema, CORBA IDL, etc.) to UML models, and generate Java source from UML diagrams. It features a Rational Rose importer, an XMI importer, HTML/PDF documentation generators, and plug-in and template support.
JDiveLog is a logbook for scuba diving. It manages all important dive data, as well as the pictures taken during the dive. Features include the ability to import UDCF data or data from Suunto, Uwatec, and HeinrichsWeikamp computers, profile generation, statistics, and a Web page generator.
SciDAVis is an interactive application aimed at data analysis and publication-quality plotting. It combines a shallow learning curve and an intuitive, easy-to-use graphical user interface with powerful features such as scriptability and extensibility. It is similar in its field of application to proprietary Windows applications like Origin and SigmaPlot, as well as free applications like QtiPlot, Labplot, and Gnuplot. What sets SciDAVis apart from the above is its emphasis on providing a friendly and open environment (in the software as well as the project) for new and experienced users alike, and particularly in providing good documentation on all levels.