Platform Independent Petri Net Editor (PIPE) creates and analyses Petri Nets quickly, efficiently, and effectively. A key design feature is the modular approach adopted for analysis, enabling new modules to be written easily and powerfully, using built-in data layer methods for standard calculations. Six analysis modules are provided, including Invariant Analysis, State-Space Analysis (deadlock, etc.), and Simulation Analysis and Classification. PIPE adheres to the XML Petri net standard (PNML). The file format for saving and loading Petri Nets is extensible through the use of XSLT, the default being PNML.
The Chemistry Development Kit (CDK) is a library of Java classes for chemo-, bioinformatics, computational chemistry, and chemometrics. It provides important algorithms like substructure search, SMILES, Gasteiger charges, QSAR descriptor calculation, 3D structure generation, 2D layout and rendering, many IO formats, atom typing, and more.
Collaba is a multimedia collaboration and communication server built to provide digital workspaces to virtual educational, corporate, and other communities. It features secure email (Web, POP3/SMTP, crypto, and anti-spam), online forums (Web, RSS, NNTP, and podcast), blogs (Web, RSS, podcast), multimedia chat (text, multimedia panel, etc.), personal and group calendering, address books, bookmarks, an online Web page editor, file services and CMS (Web, WebDAV, FTP, SMB, CIFS, anvi-virus API, and ClamAV support), digital portfolio, dynamic news board, directory access, support for multiple independent communities on one server, Single-Sign-On features (built-in support for LDAP, CAS 2.0, JAAS, SMTP-Auth and more, powerful developer API), full online server management, anti-spam (RBL and filters), anti-virus support, centralized management with LDAP directories, Web publishing of personal, group or general web sites, developer APIs, and much more.
Omnitux aims to provide various educational activities based on multimedia elements (images, sounds, and text). Possible activity types are associations, puzzles, counting activities, etc. There is support for multiple languages and multiple screen resolutions (by using SVG vector graphic files and high quality bitmap files). Omnitux activities are described in XML files, so it is possible to create new activities without modifying the program.
Visual Paradigm for UML is a Unified Modeling Language (UML) design tool that supports all UML diagrams, SysML diagrams, and entity relationship diagrams. Visual Paradigm for UML provides extensive use case modeling features, including full function UML use case diagram, flow of events editor, use case/actor grid, and activity diagram generation. Visual Paradigm for UML produces system documentation in PDF, HTML, and MS Word formats. A developer can design system documentation with the template designer. A system analyst can estimate the consequences of changes with impact analysis diagrams, such as matrix and analysis diagram. Visual Paradigm for UML generates Java code.
SDE for NetBeans is a UML modeling environment tightly integrated with NetBeans. It lets you draw all types of UML diagrams (use case diagram, class diagram, sequence diagram, activity diagram, etc.) in NetBeans, reverse source code (Java, C++, XML, XML Schema, CORBA IDL, etc.) to UML models, and generate Java source from UML diagrams. It features a Rational Rose importer, an XMI importer, HTML/PDF documentation generators, and plug-in and template support.
RapidMiner (formerly YALE) is a flexible Java environment for knowledge discovery in databases, machine learning, and data mining. Many nestable learning and preprocessing operators (including Weka) are provided. It features an XML-based graphical user interface, a plugin mechanism, and high-dimensional plotting, and provides an easy-to-use extension mechanism that makes it possible to integrate new operators and adapt the system to your personal requirements. A command line version is also included.