cw is a non-intrusive real-time ANSI color wrapper for common Unix-based commands. It is designed to simulate the environment of the commands being executed, so that if a person types 'du', 'df', 'ping', etc. in their shell it will automatically color the output in real-time according to a definition file containing the color format desired. It has support for wildcard match coloring, tokenized coloring, headers/footers, case scenario coloring, command-line- dependent definition coloring, and includes over 50 pre- made definition files.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.