LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.
Bear is a lightweight remote automation tool for Groovy/Java/JVM. It allows you to deploy projects, setup your cluster, and install software to your remote machines. It differs from other existing tools in that it uses a programmatic approach - your deployment is a regular Java class. It also uses static types, chained method calls, FP, and fluent programming techniques.
jrawio is a Service Provider Implementation for the Java Image I/O API that provides the capability to read images stored in a "camera raw" format. It supports various formats from the major camera manufacturers (e.g. NEF, CRW, CR2, PEF, SRF, MRW) as well as Adobe Digital Negative Format (DNG). It is made of pure Java code and does not require any native library.