The NCBI C++ Toolkit provides portable libraries and applications for assisting genetic science. These include libraries for networking, SQL and BerkeleyDB access, CGI and HTML handling, ASN.1 and XML handling, sequence alignment engines, sequence retrieval engines, BLAST database engines, FLTK and OpenGL graphics toolkits, and basic system utilities.
ServingXML is a markup language for expressing XML pipelines and an extensible Java framework for defining the elements of the language. It defines a vocabulary for expressing flat-XML, XML-flat, flat-flat, and XML-XML transformations in pipelines. The accompanying console app supports reading content as XML files, flat files, SQL queries, or SAX events, and writing it as XML, HTML, PDF, or mail attachments. This software is especially suited for converting flat file or database records to XML, with its support for namespaces, variant record types, multi-valued fields, segments and repeating groups, hierarchical grouping of records, and row-by-row validation with XML Schema. There is also an API for embedding the software in a Java application.
XMLToaster is a tool for extracting and loading XML from databases. It provides a modified version of SQL which has XML mapping extenstions. It can be compared to the "for xml" command in MS SQL Server 2008, but it runs on all common databases and scales to handle very large XML mappings without too much complexity. It is used as a Java library to write XML interfaces, but can also be run as a command line tool.
phpFaber CMS is a Web-based content management system that fully supports MySQL. phpFaber CMS separates content from code and allows your organization to focus on content. The code, layout, and graphics are consistent through every single page of your site. phpFaber CMS (bundle edition) includes the CMS engine and modules for articles, banner ads, bookmarks, downloads, FAQs, feedback, GeoIP, Google sitemaps, links, news, newsletters, polls, recommendations, searching, and user management.
X-Hive/DB is a powerful native XML database designed for software developers who require advanced XML data processing and storage functionality within their applications. The comprehensive X-Hive/DB Java API contains methods for storing, querying, retrieving, transforming, and publishing XML data. X-Hive/DB supports all major W3C standards, such as XQuery, XPath, DOM, XPointer, XML Schemas, and more.
4Suite is a Python-based toolkit for XML and RDF application development. It features a library of integrated tools for XML processing, implementing open technologies such as DOM, RDF, XSLT, XInclude, XPointer, XLink, XPath, XUpdate, RELAX NG, and XML/SGML Catalogs. Layered upon this is an XML and RDF data repository and server, which supports multiple methods of data access, query, indexing, transformation, rich linking, and rule processing, and provides the data infrastructure of a full database system, including transactions, concurrency, access control, and management tools. It also supports HTTP, RPC, SOAP, and FTP, plus APIs in Python and XSLT.
Ellogon is a multi-lingual, cross-platform, general-purpose language engineering environment, developed in order to aid both researchers who are doing research in computational linguistics, as well as companies who produce and deliver language engineering systems. As a language engineering platform, it offers an extensive set of facilities, including tools for processing and visualising textual/HTML/XML data and associated linguistic information, support for lexical resources (like creating and embedding lexicons), tools for creating annotated corpora, accessing databases, comparing annotated data, or transforming linguistic information into vectors for use with various machine learning algorithms.
nexB OpenAssets is a tool for inventorying, managing, and monitoring applications, software, hardware, networks, and generally any IT asset. It is designed so that system administrators, IT, and finance can determine what they have, how it is configured, what it is used for, and how much it is being used, so that informed decisions can be made. It complements existing network management software, integrates with a growing number of protocols and tools, and features no-agent discovery and inventory, configuration management including dependencies and correlation, monitoring, and reporting. It makes extensive and innovative use of XML, Xpath, and Xquery.
Babeldoc is a framework and set of applications to process documents for business-to-business and other Internet/integration applications. It is primarily intended for text documents, especially XML, but supports a wide range of operations and data types. It has a sophisticated journaling system that supports replaying and reprocessing. Babeldoc is pipeline based and supports numerous ways to combine the pipeline stages in a dynamically reconfigurable fashion. It has a GUI and a Web-based console for document processing and monitoring, and comes with tools for the tranformation of flatfile data to XML, archival, and cryptography. Additionally it is able to scan various data sources based on sophisticated constraints.