Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.
SuperWaba is a VM for PDAs. Because of the way it was written, you can use Java to develop programs for it. It supports exceptions, threads, many user interface controls, double and long 64-bit types, grayscale, color, 3D controls, and JNI and Java libraries, among other features. The project has been superseded and replaced with TotalCross.
K.E.T.T.L.E (Kettle ETTL Environment) is a meta- data driven ETL (Extraction, Transformation, Transportation, and Loading) tool. This means that no code has to be written to perform complex data transformations. It is possible to create plugins to do custom transformations or access proprietary data sources. Kettle supports most databases on the market, and has native support for slowly changing dimensions on most database platforms.
Lucane is a free groupware platform written in Java, designed with extensibility in mind. Some applications are bundled with the platform, like a peer to peer quick message service, client/server and peer to peer file sharing, shared drawing, multi-user chat, audioconf, forums, a shared calendar, and more. The platform as a whole provides easy development for your networked applications with an object based network protocol, client/server and peer to peer integration, user and groups management, internationalization, and more.
GRAL is a library for creating high quality plots and charts in Java. Many plot types are available like scatter plot, bubble plots, line plots, area plots, pie charts, and bar charts. Additionally, GRAL can exchange and process data (smoothing), and various plug-ins allow the import and export of data and graphics to formats like CSV, JPEG, PNG, EPS, PDF, or SVG.