VRaptor 2 is a Web-based MVC and IOC framework based on many frameworks and ideas (Seam, Stripes, Webwork, Hibernate Annotations, etc). It makes full use of Java 5 Annotations. It favors convention over configuration, because configuration in XML/properties/annotations is always easy to make mistakes and repetitive (aka copy and paste in many places). This framework uses a more imperative approach, instead of having many XML files to configure lifecycle and other properties. Most of the settings go inside plain Java objects (POJO), so the team knows exactly what is going on and where.
LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.
OpenDMTP (Open Device Monitoring and Tracking Protocol) is a highly configurable and extensible protocol for communicating with mobile devices over high-latency/low-bandwidth networks. The protocol is particularly geared towards the transmission of GPS base location information and includes a full-featured reference implementation showcasing its capabilities.
jrawio is a Service Provider Implementation for the Java Image I/O API that provides the capability to read images stored in a "camera raw" format. It supports various formats from the major camera manufacturers (e.g. NEF, CRW, CR2, PEF, SRF, MRW) as well as Adobe Digital Negative Format (DNG). It is made of pure Java code and does not require any native library.
Bear is a lightweight remote automation tool for Groovy/Java/JVM. It allows you to deploy projects, setup your cluster, and install software to your remote machines. It differs from other existing tools in that it uses a programmatic approach - your deployment is a regular Java class. It also uses static types, chained method calls, FP, and fluent programming techniques.
CrossFTP Server is a professional FTP server for multiple platforms. It offers a high-performance, easily configurable, and, most of all, secure-enabled FTP server. Its main advantage is that it is very easy to get started by novice users, and meets advanced users' requirements as well. It supports user virtual directories, write permissions, idle time-out, and upload/download bandwidth limitations. You can monitor all user activities. Both upload and download files are resumable. A database and LDAP can be used to store user data. "MODE Z" is supported for faster transfers.
Jim (Java Image Manager) is a program for managing your personal images (photos, etc.). While Jim is really easy to use, its tagging technology is quite powerful. A plugin system makes it easy extensible with new technologies. It runs on several operating systems (including Windows, Linux and many more); all you need is a Java Runtime Environment.