The Biochemical ALgorithms Library (BALL) is a framework for rapid application development in molecular modeling and structural bioinformatics. BALL provides an extensive set of data structures as well as classes for molecular mechanics, advanced solvation methods, comparison and analysis of protein structures, file import/export, NMR shift prediction, and visualization. Its extensibility results from an object-oriented and generic programming approach.
DAE Tools is cross-platform equation-oriented process modelling, simulation, and optimization software. Various types of processes (lumped or distributed, steady-state or dynamic) can be modelled and optimized. They may range from very simple to those which require complex operating procedures. Equations can be ordinary or discontinuous, where discontinuities are automatically handled by the framework. Model reports containing all information about a model can be exported in XML MathML format, automatically creating high-quality documentation. The simulation results can be visualized, plotted, and/or exported into various formats.
Dandelion is a 3D graph rendering application which can be controlled across a network. Its main purpose is to allow clear network graphs to be rendered in a window, which can be controlled by a separate application or the user. The Dandelion visualization is actually controlled by issuing simple commands to it across the network (although this could all be happening on a single machine). The Dandelion source includes a set of very simple libraries which can be incorporated into other applications and which can be used to send these commands. Libraries are included for C, C#, Java, and Python. The project was developed at Liverpool John Moores University within the PROTECT Centre.
Entrance is a program for browsing MySQL databases. It includes a "match box" search facility that is simlar to the Mac's Spotlight. Entrance can create charts based on query results, and these charts can be zoomed and panned. Entrance also supports an innovative feature called "data painting" that allows users to select and paint data points interactively.