Bioclipse is a rich-client platform chemistry and
biology workbench. It provides access to many open
source bioinformatics and chemoinformatics
toolkits and has plugins for the Chemistry
Development Kit, JChemPaint, Jmol, and BioJava.
A ready-to-use architecture to ease the creation of MDI-style applications in Java.
A Perl/XML log analyzer, alerter, and reporter.