The Structural Proteomics Application Development Environment (SPADE) provides a community suite for developing and sharing protein structure and sequence tools. It includes a custom molecular viewer, sequence alignment editor, many reusable tools, and a chemical probing suite to support experimental verification of predicted structural models.
GoFigure2 is a cross-platform application for visualization, processing, and analysis of out-of-core multidimensional microscopy data (5D data sets). Users can visualize images, segment cells in 3d, track cells through time, and detect cell divisions to generate lineages. Results are stored in a MySQL database back-end. Once data has been processed, cell-based object features are quantified and can be used for sorting, color-coding, analysis, or exported to external tools. GoFigure2 was developed for biology research including studying the development of embryos (zebrafish and mouse), synthetic biology (signaling), and for drug screening.
ARS (Autonomous Robot Simulator) is a physically-accurate simulation suite for research and development of mobile manipulators and, in general, any multi-body system. It is modular, easy to learn and use, and can be a valuable tool in the process of robot design, in the development of control and reasoning algorithms, and in teaching and educational activities. It will encompass a wide range of tools spanning from kinematics and dynamics simulation to robot interfacing and control.
Cassandra is a scientific data viewer based on VTK. Cassandra provides dynamic interaction with the VTK pipeline and enables the user to load plug-ins dynamically in order to perform specific tasks in data manipulation and visualisation. Cassandra is open and modular, and can easily be extended to new filters through a set of dynamically loadable plug-ins. A plug-in template is provided to help users to develop and share their own plug-ins. This approach allows users to perform complex filtering without any specific knowledge of VTK or C++.
Crossbones is used to generate 3D skeletons based on Total Station data, or similar digital data sets from optical surveys, created using the new X-Bones recording methodology. It is intended as a tool for for rapid surveying and visualization of dense skeletal assemblages, such as in mass graves or cemeteries.