GoFigure2 is a cross-platform application for visualization, processing, and analysis of out-of-core multidimensional microscopy data (5D data sets). Users can visualize images, segment cells in 3d, track cells through time, and detect cell divisions to generate lineages. Results are stored in a MySQL database back-end. Once data has been processed, cell-based object features are quantified and can be used for sorting, color-coding, analysis, or exported to external tools. GoFigure2 was developed for biology research including studying the development of embryos (zebrafish and mouse), synthetic biology (signaling), and for drug screening.
The Image-Guided Surgery Toolkit is a high-level, component-based framework that provides common functionality for image-guided surgery applications. The framework is a set of high-level components integrated with low-level open source software libraries and application programming interfaces (API) from hardware vendors. IGSTK provides, among other things, the ability to read and display medical images, an interface to common tracking hardware, and GUI and visualization capabilities.
CodeQuery is a tool for indexing and then querying or searching C, C++, Java, Python, Ruby, and Go source code. It builds upon the databases of cscope and ctags, which are processed by the cqmakedb tool to generate a CodeQuery database file. This can be viewed and queried with a GUI tool. The features include auto-completion of search terms and visualization of function call graphs and class inheritance. The following queries can be made: Symbol, Function or macro, Class or struct, Functions calling this function, Functions called by this function, Class which owns this member or method, Members and methods of this class, Parent of this class (inheritance), Children of this class (inheritance), Files including this file, and Full path for file.