Baudline is a time-frequency browser designed for scientific visualization of the spectral domain. Signal analysis is performed by Fourier, correlation, and raster transforms that create colorful spectrograms with vibrant detail. Conduct test and measurement experiments with the built in function generator, or play back audio files with a multitude of effects and filters. The baudline signal analyzer combines fast digital signal processing, versatile high speed displays, and continuous capture tools for hunting down and studying elusive signal characteristics.
BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.
BRL-CAD is a powerful constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing support for rendering and geometric analysis, path-tracing for realistic image synthesis, network distributed framebuffer support, and image and signal-processing tools.
DINO is a realtime visualization program for structural biology data, including protein and nucleic-acid coordinates, molecular surfaces, electrostatic potentials, electron densities, surface topographs (from AFM), and MD trajectories. It supports PNG, PostScript and POVray (3.1g and megapov) output. Supported platforms are Linux/i386, Linux/PPC, IRIX, Sun, OSF1, and MacOS X.
fsv, the 3D File System Visualizer, allows you to view a collection of directories and files as three-dimensional geometry. It represents all or part of a filesystem as a collection of blocks of varying sizes, each labeled with a filename, and arranged in a manner consistent with the original directory structure. fsv can visualize any arbitrarily large collection of files, limited only by memory and hardware constraints. Program features include an integrated 2D interface, intelligent camera handling, and extensive use of animation. fsv requires OpenGL.
g2 is an easy to use, portable and powerful 2D graphics library. It provides a comprehensive set of functions for simultaneous generation of graphical output on different types of devices. The following devices are currently supported: Postscript, X11, FIG (xfig), PNG, and JPEG using the gd library, and Win32. g2 is written in C (ANSI) and additionally has Fortran, Perl, and Python interfaces.
Genius is an arbitrary precision integer and multiple precision floating point calculator. It includes its own programming language similar in some aspects to C, bc, or Pascal. It can deal with rational numbers and complex numbers. It has matrix support as well. It uses the gmp library so it is very fast for calculations of large numbers. It has a command line and a GNOME interface. The GNOME interface supports plotting functions and 3D surfaces.
graphviz is a set of graph drawing tools and libraries. It supports hierarchical and mass-spring drawings; although the tools are scalable, their emphasis is on making very good drawings of reasonably-sized graphs. Package components include batch layout filters and interactive editors for X11, Java, and a TCL/tk extension. The batch filters can be configured as a web visualization service (using GIF and click-maps). Typical applications include display of finite state machines, software diagrams, database schemas, and communication networks.