cw is a non-intrusive real-time ANSI color wrapper for common Unix-based commands. It is designed to simulate the environment of the commands being executed, so that if a person types 'du', 'df', 'ping', etc. in their shell it will automatically color the output in real-time according to a definition file containing the color format desired. It has support for wildcard match coloring, tokenized coloring, headers/footers, case scenario coloring, command-line- dependent definition coloring, and includes over 50 pre- made definition files.
libalinga is a C++ implementation of a multi-stream codec for the ALingA (Aligned Linguistic Annotation) format. It makes use of libogg++. Each ALingA stream holds at least one stream of annotation data, which is in the LingA format. It may also interleave the signal stream(s) against which the LingA streams are aligned, or it may simply reference such streams. It also provides metadata about the underlying manifold for the signals and the annotations. The metadata is ordered for runtime parsing of the number and type of signal and LingA codecs to enable decoding of the multiple logical streams in one pass.
libalinga-java is a Java native interface to libalinga. It provides C++ and Java wrappers, as well as Java classes. It also provides control files to generate them from the libalinga interface using the program swig. The major and minor versions of this JNI will track that of libalinga, but its bugfixes are independent of libalinga bugfixes.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.