white_dune is a graphical VRML97/X3DV editor, simple NURBS/Superformula 3D modeller, animation tool, and VRML97/X3DV commandline compiler in development. VRML97 (Virtual Reality Modeling Language) is the ISO standard for displaying 3D data over the Web via browser plugins ("HTML for realtime 3D"). X3DV is the direct successor of VRML97. VRML97 and X3DV have support for animation, real-time interaction, and multimedia (images, movies, and sounds). white_dune can read, create, and display VRML97/X3DV files and let the user change the scenegraph/fields. It also has support for stereoscopic view via "quadbuffer"-capable stereo visuals, and support for 3D input devices like a joystick, spaceball, or magnetic tracker.
GNU parallel is a shell tool for executing jobs in parallel locally or using remote computers. A job is typically a single command or a small script that has to be run for each of the lines in the input. The typical input is a list of files, a list of hosts, a list of users, a list of URLs, or a list of tables. If you use xargs today you will find GNU parallel very easy to use, as GNU parallel is written to have the same options as xargs. If you write loops in shell, you will find GNU parallel may be able to replace most of the loops and make them run faster by running several jobs in parallel. GNU parallel makes sure output from the commands is the same output as you would get had you run the commands sequentially. This makes it possible to use output from GNU parallel as input for other programs.
cw is a non-intrusive real-time ANSI color wrapper for common Unix-based commands. It is designed to simulate the environment of the commands being executed, so that if a person types 'du', 'df', 'ping', etc. in their shell it will automatically color the output in real-time according to a definition file containing the color format desired. It has support for wildcard match coloring, tokenized coloring, headers/footers, case scenario coloring, command-line- dependent definition coloring, and includes over 50 pre- made definition files.
WebGlimpse is a scalable, feature-rich search engine for indexing your Web site or any collection of local and remote sites you choose. Features include customizable output formats, custom ranking/ordering of hits, fuzzy matching, boolean queries, a Web administration interface for multiple archives, logging of queries, caching of results, and more. Localized search interfaces are provided in multiple languages including Spanish, German, French, Italian, Norwegian, Finnish, Russian, Hebrew, and others. It supports 3rd party filters for indexing PDF, Word, and Excel files. It is free for academic and most nonprofit users.
PHP Content Management System (phpCMS) makes it possible to need only one template for your whole Web site. It allows you to provide dynamic menus with unlimited levels, and use templates and sub-templates without a database. It is search engine-friendly and proxy-friendly, as the pages it generates can not be distinguished from static HTML pages. PHP code can be added to any template and content file with an optional module. It supports the caching of parsed pages and gzip compression.
Absolut Engine is a PHP/MySQL framework built on the basis of a former news publishing system. It features 3 layer access, article posting, editing, and deleting. Included are a basic image and file manager as well as a related articles manager. Rich text editing is provided via a built-in WYSIWYG editor that produces XHTML 1.0 Strict compliant code. It is easy to extend via the module functionality. It is fully configurable and easy-to-use. Modules include discussions, surveys, RSS feed export and import, search engine optimization, a messaging system, weather reports, and Google Maps.
Tabfmt is a command line utility to format tabular data. The program reads lines from one or more files or from standard input, breaks the lines into fields given a set of input field delimiters, and prints a table with constant-width columns to standard output or a specified file. Many options exist to customise the output.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.