GNU TeXmacs is a free wysiwyw (what you see is what you want) editing platform with special features for scientists. The software aims to provide a unified and user friendly framework for editing structured documents with different types of content: text, mathematics, graphics, interactive content. TeXmacs can also be used as an interface to many external systems for computer algebra, numerical analysis, and statistics. New presentation styles can be written by the user and new features can be added to the editor using Scheme.
NOTE is a small console program that allows you to manage notes similar to programs like "knotes" from the command line. It supports different database backends for storage, and includes a DBI-based MySQL module and another module that uses a binary file for storage and a DBM module.
PHP Shell is a shell wrapped in a PHP script. It's a tool you can use to execute arbiritary shell-commands or browse the filesystem on your remote Web server. This replaces, to a degree, a normal telnet-connection. You can use it for administration and maintenance of your Web site using commands like ps, free, du, df, and more.