The Advanced Bash Scripting Guide is both a reference and a tutorial on shell scripting. This comprehensive book, the equivalent of 1,000+ print pages, covers almost every aspect of shell scripting. It contains 382 profusely commented illustrative examples, a number of tables, and a cross-linked index/glossary. Not just a shell scripting tutorial, this book also provides an introduction to basic programming techniques, such as sorting and recursion. Included scripts are the Game of Life, a Perquackey variant, a Morse code trainer, and an implementation of the Gronsfeld Cipher. This book is suited for both individual study and classroom use. It covers Bash, up to and including version 4.2. Note that users of miniaturized single-board computers running Linux, such as the Raspberry Pi and the Beagle Bone, would find this Guide useful for learning and running Bash scripts to explore and expand the capabilities of these small, but powerful machines.
Allegro Common Lisp is a full ANSI Common Lisp (1994) implementation. It contains many extensions, including 32- and 64-bit native compilation, efficient built-in memory management, foreign functions (for interfacing with other languages), multiprocessing, UNICODE and locale support, XML/HTML parsers, a Web client and server, GTK+ interface (1.2 and 2.0), Java interface, OLE interface (Windows only), profiler, regular expressions, an XML RPC implementation, native Lisp RPC, sockets, DLL and shared library support, and more.
Amiba is a Gene Expression Programming (GEP) framework for Java. GEP is, like genetic algorithms, a branch of evolutionary computing. The framework separates the process of evolution from the process of interpretation of the chromosome, allowing the use of various schemes. For example, graphs may be used as terminals and graph operations as operators in the chromosome instead of the usual double precision numbers. It implements mutation, transposition, and recombination. Options and rates are easily configured through an XML file. A mechanism to load fitness cases in bulk is also provided.
Aorta is a load-balancing clustered P2P application. It executes Tasklets (which have the ability to split themselves into sub tasks that can be executed in pararell). A typical cluster contains of a LAN with 1-256 computers, each one running aorta. A Tasklet can be of any type ranging from encoding MP3s, Genomic DNA Alignment, or simply to rendering Web pages for high speed/heavily loaded Web sites. You can make functions calls to C/C++, applications like Matlab, etc.
ArgoUML is a pure Java open source UML CASE tool that provides cognitive support for object-oriented design. ArgoUML provides some of the same editing and code generation features of a commercial CASE tool, but it focuses on features that enhance usability and support the cognitive needs of designers. Uses XML file formats: XMI and PGML.
BALLView is an extensible viewer for bio-molecular structures. It provides all standard models and offers rich functionality for molecular modeling and simulation, including molecular mechanics methods (AMBER, CHARMM, and MMFF94 force fields), continuum electrostatics methods employing a Finite-Difference Poisson Boltzmann solver, secondary structure calculation, molecular editing and docking. Since BALLView is based on BALL (the Biochemical ALgorithms Library), it is easily extensible on the level of C++ code. In addition, it provides a Python interface with Integrated Development Environment features to allow interactive rapid prototyping.