ded, the directory editor, allows you to navigate multiple file lists or a directory tree, viewing or changing file attributes rapidly. In addition to conventional file information, it operates on files' RCS or SCCS archives, making it useful for source control as well as system administration. It is curses-based.
phpRemoteShell is an all-in-one Web application to manage servers remotely. It contains a full-featured file manager, the ability to execute shell commands or code written for PHP, SQL, or LDAP, a crontab manager, and a zombie manager. It can also host itself into existing files and auto-deploy during their execution. In case it has been previously encrypted, it is able to self-decrypt on the fly.
OneFinger is a general-purpose GUI for composing CLI commands with the mouse. Although entirely graphical, it does not attempt to hide the underlying CLI language. It increases your productivity over classical hand-typing by caching commands typed into terminals, which tend to be highly repetitive. Repeated commands can be selected from a list, ordered by last usage time. It includes an integrated file browser that helps you insert filenames without typing them. and allows you to see only those programs that make sense with a given file.