RSS 2 projects tagged "sequence data"

Download Website Updated 29 Sep 2012 Fqutils

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Pop 33.63
Vit 2.02

Fqutils provides a basic set of bioinformatics command line tools for working with sequence data in FASTQ format. It complements Greg Hannon's fine Fastx Toolkit suite. One characteristic of Fqutils is that it correctly handles the full FASTQ format as described by the published standard, which specifically allows multi-line sequence and quality score information per record. Fqutils is intended to be useful as part of the early portions of post-sequencing pipelines and quality assessment processes.

No download No website Updated 25 Sep 2012 Bio::SeqReader

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Pop 21.26
Vit 1.00

Bio::SeqReader provides a lightweight alternative to Bioperl when all you really need is a helper for reading sequence data. The Bio::SeqReader::Fastq class correctly handles FASTQ input with multiline sequence or quality data.

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A control protocol for various astronomical instruments (telescopes, CCDs, etc).