graphviz is a set of graph drawing tools and libraries. It supports hierarchical and mass-spring drawings; although the tools are scalable, their emphasis is on making very good drawings of reasonably-sized graphs. Package components include batch layout filters and interactive editors for X11, Java, and a TCL/tk extension. The batch filters can be configured as a web visualization service (using GIF and click-maps). Typical applications include display of finite state machines, software diagrams, database schemas, and communication networks.
Veusz is a scientific plotting package, designed to create publication-ready Postscript, PDF, or SVG output. It features an easy to use graphical interface as well as a command line interface and can be scripted or embedded in Python scripts. Graphs are constructed in a modular fashion from separate components. Datasets can be interactively modified or created from within the program.
Open Tool Kit (Otk) is a portable widget library for making graphical user interfaces for C programs. It emphasizes simplicity for the application programmer without eliminating capability. Based on OpenGL, Otk supports Linux, Unix, and other OSs neutrally and efficiently. It is simple and compact, and it strives for easy compilation and linking to other applications. In seeking to address several issues associated with earlier graphics APIs, Otk explores some interesting methods, such as window-relative layout instead of pixel-based layout.
Social Networks Visualizer (SocNetV) is a flexible and user-friendly tool for the analysis and visualization of Social Networks. It lets you construct mathematical graphs with a few clicks on a virtual canvas, load networks of various formats (GraphViz, GraphML, Adjacency, Pajek, UCINET, etc), or create a network by crawling all links in a Web page. The application can compute basic network properties, such as density, diameter, and distances (shortest path lengths), as well as more advanced structural statistics, such as node and network centralities (i.e. closeness, betweenness, graph), clustering coefficient, etc.
The Noble Ape Simulation is a collection of a number of autonomous simulation components including a landscape simulation, biological simulation, weather simulation, sentient creature (Noble Ape) simulation, and a simple intelligent-agent scripting language (ApeScript). Noble Ape also contains a social simulation where the Noble Apes can be tracked in terms of social groups and also over many generations to explain social phenomenon to users looking to study this kind of interaction. It has been in development for more than a fifteen years.
The Java Algebra System (JAS) is an object oriented, type safe, multi-threaded approach to computer algebra. JAS provides a well designed software library using generic types for algebraic computations implemented in the Java programming language. The library can be used as any other Java software package, or it can be used interactively or interpreted through a Jython or JRuby front end. The focus at the moment is on commutative and solvable polynomials, power-series, multivariate polynomial factorization, Gröbner bases, and applications.