ParseGenBank is a minimalistic, incremental, event-driven GenBank Flat File Format parser. It aims to efficiently produce events for keywords, features, qualifiers, and coding data. It does not attempt to parse the contents of feature or qualifier data, but provides a framework on which such a system can be built.
Cybercluster is a multi-master replication solution. Cybercluster has no single point of failure, an integrated load balancer, an integrated replication server, a monitoring server (to track replication), a consistency checker, an optional 2 Phase Commit for cluster-wide writing, support for all PostgreSQL features. Cybercluster is easy to setup. In contrast to many other solutions, Cybercluster is built on top of the PostgreSQL core and has full access to PostgreSQL internals. Cybercluster is heavily based on the concepts of PGCluster.
Moab Grid Suite is a professional grid workload management solution that integrates scheduling, management, monitoring, and reporting of workloads across independent clusters. Moab makes moving to a grid easy by adding grid-optimized job submission and management in a matter of minutes. Moab optimizes data staging and seamlessly integrates with existing security mechanisms or with grid security tool kits such as Globus. It gives sites extensive control over ownership-based access, priority, and service levels. It provides fine-tuned control over the workload and resources to make the grid usable.
Red-Piranha is a search system that can actually learn what you are looking for. It can be used as a Web page, command line, or XML-WebService, so it will work with most languages, including Java, Perl, C#/.NET, and PHP. It includes learning abilities for the Desktop/Internet search functionality. All feedback from the user is stored in (editable) XML and RDF, and is used by the system to improve the quality of searches.
VisIt is an interactive parallel visualization and graphical analysis tool for viewing scientific data. Users can quickly generate visualizations from their data, animate them through time, manipulate them, and save the resulting images for presentations. VisIt contains a rich set of visualization features so that you can view your data in a variety of ways. It can be used to visualize scalar and vector fields defined on two- and three-dimensional (2D and 3D) structured and unstructured meshes. It was designed to interactively handle very large data set sizes in the terascale range, and works well down to small data sets in the kilobyte range.
The Bioinformatics Benchmark System is an attempt to build a reasonable testing framework, tests, and data, to enable end users and vendors to probe the performance of their systems. It is not trying to be the last word in informatics benchmarking, as there are simply too many codes, tests, data sets, and databases. The goal is to create a core of tests that all may download and use to probe specific elements of system performance. The end goal is to enable a pluggable set of tests, including the core tests, so that performance data may be gathered.
LinkGrammar-WN is a lexicon expansion for the Link Grammar Parser. The Link Grammar Parser is a syntactic parser of the English language that is capable of handling a wide variety of syntactic constructions and is considered quite robust. The LinkGrammar-WN project aims to import lexical information from WordNet in an effort to increase the size of the LGP lexicon. This project is of interest to anyone interested in NLP (natural language parsing) of English text.
xd3d is a simple scientific visualization tool designed to be easy to learn. It can plot 2D and 3D meshes, with shadowing, contour plots, vector fields, iso-contour (3D), as well as 3D surfaces z=f(x,y) defined by an algebraic expression or a cloud of points. It generates high-quality vector PostScript files for scientific publications and still or animated bitmap images. The distribution includes the graph plotter, xgraphic.
GraphPak is a programming library of 2D and 3D charting objects for the Qt toolkit. It provides software developers with a set of C++ objects to easily create charts or graphs that aid in the visual presentation of technical and business data. This release includes Bar, Line, Pie, Ring, Area, Hi-Lo, Box and Whisker, and Polar charts. It is based on the KD Chart product from Klarälvdalens Datakonsult AB.