StarORF is a tool that facilitates the identification of the protein(s) encoded in DNA sequences and allows for transforming input sequence in its reverse complements. It allows students to define the minimal ORF length detected and highlighted by the software. Students can see putative ORF protein sequence (longer than specified ORF length), visualize start and stop codons in the sequence, and navigate imported sequences. The StarORF site contains a software user manual, video tutorial, and exercises applicable to high school and college classrooms.
Racket (formerly PLT Scheme) is a programming language suitable for implementation tasks ranging from scripting to application development, including GUIs, Web services, etc. It includes the DrRacket programming environment, a virtual machine with a just-in-time compiler, tools for creating stand-alone executables, the Racket Web server, extensive libraries, documentation for both beginners and experts, and more. It supports the creation of new programming languages through a rich, expressive syntax system. Example languages include Typed Racket, ACL2, FrTime, and Lazy Racket.
GraphInsight is visualization software that lets you explore graph data through high quality interactive representations. Data exploration and knowledge extraction from graphs is of great interest nowadays: knowledge is disseminated in social networks, and services are powered by cloud computing platforms. Data miners deal with graphs every day. Humans are extremely good at identifying patterns and outliers. Interacting visually with your data can give you better intuition and higher confidence in what you are looking for.
Kelvin is a units converter intended for scientists, teachers, and students who need a reliable tool for fast conversion. Some categories included are: acceleration, area, frequency, atomic physics, density, electrical capacitance, electromagnetic radiation, energy/work, flow, force, fuel consumption, illumination, length, luminance, luminous flux, magnetomotive force, mass, power, prefixes and suffixes, pressure and stress, specific heat, speed/velocity, temperature, thermal resistance, time, torque, viscosity (dynamic), viscosity (kinematic), volume, and dry/liquid capacity.
HEALPix is a set of scientific tools implementing the Hierarchical Equal Area isoLatitude Pixelation of the sphere. As suggested in the name, this pixelation produces a subdivision of a spherical surface in which every single pixel covers the same surface area. HEALPix provides various programs and libraries in C, C++, Fortran, GDL/IDL, Java, and Python which facilitate discretization, simulation, processing, analysis, and visualization of data on the sphere up to very high resolution. It is the state-of-the-art program used in astronomy and cosmology to deal with massive full-sky data sets.
Thinknowlogy is grammar-based software, designed to utilize the Natural Laws of Intelligence in grammar, in order to create intelligence through natural language in software. This is demonstrated by programming in natural language, reasoning in natural language and drawing conclusions (more detailed than scientific solutions), making assumptions (with self-adjusting level of uncertainty), asking questions (about gaps in the knowledge), and detecting conflicts in the knowledge. It builds semantics autonomously (with no vocabularies or words lists), detecting some cases of semantic ambiguity. It is multi-grammar, proving that Natural Laws of Intelligence are universal.
FLENS is short for Flexible Library for Efficient Numerical Solutions. This C++ can be used as a builing block for the implementation of other (higher-level) numerical libraries or numerical applications. It is a C++ library (requires a C++11 conform compiler). Easy install, as FLENS is headers only. It gives you Matrix/vector types for dense linear algebra; a generic (i.e. templated) implementation of BLAS; and a generic reimplementation of LAPACK. If high performance BLAS libraries like ATLAS, GotoBLAS, etc. are available, you simply can link against them and boost performance.
GriF is a collaborative grid framework to support computational chemistry applications. It is meant to be used as a tool to facilitate massive grid calculations and also to improve scientific collaboration. Accordingly, GriF facilitates profiling the users of grid communities in order to systematically evaluate the work carried out in a grid and to foster its sustainability.