Jikes RVM (Research Virtual Machine) provides a flexible open testbed to prototype virtual machine technologies and experiment with a large variety of design alternatives. Jikes RVM runs on many platforms and advances the state-of-the-art of virtual machine technologies for dynamic compilation, adaptive optimization, garbage collection, thread scheduling, and synchronization. It is self-hosted, i.e. its Java code runs on itself without requiring a second virtual machine. Most other virtual machines for the Java platform are written in native code (typically C or C++). A Java implementation provides ease of portability and a seamless integration of virtual machine and application resources such as objects, threads, and operating-system interfaces.
StarCluster is a utility for creating traditional computing clusters used in research labs or for general distributed computing applications on Amazon's Elastic Compute Cloud (EC2). It uses a simple configuration file provided by the user to request cloud resources from Amazon and to automatically configure them with a queuing system, an NFS shared /home directory, passwordless SSH, OpenMPI, and ~140GB scratch disk space. It consists of a Python library and a simple command line interface to the library. For end-users, the command line interface provides simple intuitive options for getting started with distributed computing on EC2 (i.e. starting/stopping clusters, managing AMIs, etc). For developers, the library wraps the EC2 API to provide a simplified interface for launching/terminating nodes, executing commands on the nodes, copying files to/from the nodes, etc.
ASTRA is a set of software tools for mediated interpersonal awareness, addressing the need to stay in touch with family and friends or the need to be reassured regarding their well-being. The software provides a service oriented architecture, user tools, and applications that support communities to appropriate Pervasive Awareness applications.
GPlates offers a novel combination of interactive plate-tectonic reconstructions, geographic information system (GIS) functionality, and raster data visualization. GPlates enables both the visualization and the manipulation of plate-tectonic reconstructions and associated geological, geophysical, and paleo-geographic data through geological time.
Gerbil consists of an interactive visualization tool targeted at multispectral and hyperspectral image data, and a toolbox of common algorithms, e.g. for segmentation. Multispectral imaging has been gaining popularity and has been gradually applied to many fields besides remote sensing. However, due to the high dimensionality of the data, both human observers and computers have difficulty interpreting this wealth of information. Gerbil facilitates the visualization of the relationship between spectral and topological information in a novel fashion. It puts emphasis on the spectral gradient, which is shown to provide enhanced information for many reflectance analysis tasks. It also includes a rich toolbox for evaluation of image segmentation and other algorithms in the multispectral domain. The parallel coordinates visualization technique is combined with hashing for a highly interactive visual connection between spectral distribution, spectral gradient, and topology.
Theano is a Python library that allows you to define, optimize, and evaluate mathematical expressions involving multi-dimensional arrays efficiently. Theano features tight integration with numpy, transparent use of a GPU, efficient symbolic differentiation, speed and stability optimizations, dynamic C code generation, and extensive unit-testing and self-verification. Theano has been powering large-scale computationally intensive scientific investigations since 2007. But it is also approachable enough to be used in the classroom (IFT6266 at the University of Montreal).
The Smart Card Detective (SCD) is a general framework for research on smart cards. It allows you to monitor any smart card application (including Chip and PIN / EMV transactions) and create your custom applications. The software is completely open source, and the hardware can be bought from Smart Architects. The device has a smart card interface as well as a terminal/reader interface, allowing the SCD to act as a passive/active monitor between a card and a reader or emulate a card or a terminal. Using the Python command line interface, you can interact with the SCD using a PC. This allows more flexible operation, although the SCD also features many stand-alone applications and a battery so that you can also use it without a PC.
LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.