The Python Macromolecular Library (mmLib) is a software toolkit and library of routines for the analysis and manipulation of macromolecular structural models, implemented in the Python programming language. It is accessed via a layered, object-oriented application programming interface, and provides a range of useful software components for parsing mmCIF, PDB, and MTZ files, a library of atomic elements and monomers, an object-oriented data structure describing biological macromolecules, and an OpenGL molecular viewer. The mmLib data model is designed to provide easy access to the various levels of detail needed to implement high-level application programs for macromolecular crystallography, NMR, modeling, and visualization. This includes specialized classes for proteins, DNA, amino acids, and nucleic acids.
XCircuit is a UNIX/X11 program for drawing publishable-quality electrical circuit schematic diagrams and related figures, and producing circuit netlists through schematic capture. XCircuit regards circuits as inherently hierarchical, and writes both hierarchical PostScript output and hierarchical SPICE netlists. Circuit components are saved in and retrieved from libraries which are fully editable. XCircuit does not separate artistic expression from circuit drawing; it maintains flexiblity in style without compromising the power of schematic capture.
The Data Mine is a search engine designed to make a more useful interface available to users. It is designed around human-computer intelligent interaction considerations. It divides the screen into two halves. One lets you find all the instances of your query's keywords, and the other lets you look through a highlighted version of the results you choose.
Y Object Database Adapter (YODA) is an environment for creating and running network accessible applications. It can permanently store objects of any type and complexity, and supports attributes of most types (with the exception of only a few Python types, such as thread locks). It can be extended with YODA- server applications, and an application compiler and loader are provided.
SearchLog can be used as a searchable weblog. It is designed with usability in mind, and uses highlighting and easy linking between entries to give the user maximum power for minimum effort. It is much more than a weblog, however. It was designed as a knowledge management tool. It serves as a personal information management tool and portal. It is powerful and versatile enough to do several jobs well.
The Mobile Web Proxy is a (CGI) tool to make more Web pages available from some mobile devices (cell phone Web browsers, etc.). It employs tag cleaning and paging so that Web pages it can access have far greater chances of being rendered on devices that cannot display overly large or complex pages. It is simple, but it seems to substantially extend the portion of the Web available from devices that otherwise display messages like "413: Page cannot be displayed."
libphidgets is a user-space access library for the Phidget devices. It provides a generic and flexible way to access and interact with the Phidgets, and comes with all the advantages of a user-space library. It is based on libhid (which is based on libusb), thus it requires no HID support in the kernel. Furthermore, it aims to support all operating system supported by libusb/libhid: Linux, BSD, OS X, and Windows.
Catch the Furball is an icebreaker board game intended for friends to play around a computer. It features a freshly-generated board for each game, an eclectic collection of cards, and beautiful pictures of Cambridge University. The distribution is intended both to allow Web masters to quickly set up their own copy of the game, and to allow tinkerers to use the game engine to make their own games. It includes the editor used to create game data.