GNU dico is a flexible dictionary server with a set of accompanying utilities. It supports a wide variety of dictionary database formats, ranging from the traditional "dict.org" databases up to Wikipedia format. Support for arbitrary new formats can be easily added using loadable modules. The dico library provides an API for writing new modules in C, Guile, or Python.
Esra is a scriptable, scalable, and highly hackable molecular mechanics library for Java. Its primary purpose is the statistical analysis of trajectory data generated with packages such as GROMOS, GROMACS, or AMBER, but it can also be used as a standalone package for performing simple molecular dynamics and Monte-Carlo simulations. It can be scripted with Jython, Mathematica, or Matlab.
Peers is a distributed programming toolkit designed for building peer-to-peer systems. The toolkit is a hybrid language project which offers low level primitives for managing concurrency and communication. Using these primitives, complex P2P protocols and complete systems can be designed and implemented in Python, while maintaining high performance for critical operations.
CoaSim is a tool for simulating the coalescent process with recombination and gene conversion under the assumption of exponential population growth. It efficiently constructs the ancestral recombination graph for a given number of individuals and uses this to simulate samples of SNP and micro satellite haplotypes/genotypes. The generated sample can afterwards be separated in cases and controls, depending on the states of selected individual markers. The tool can accordingly also be used to construct cases and control data sets for association studies.
ECB is a source code browser for (x)emacs. It displays a couple of windows that can be used to browse directories, files, and file contents like methods and variables. It supports source code parsing for languages like Java, C, C++, Elisp, Scheme, Perl, TeX, LaTeX, etc. In addition, it offers an (optional) permanent "compile window" at the bottom of the emacs frame, which is used to display all help and compile output. The rest of the frame is called the "edit area", which can be divided into several edit windows that are used for editing the sources. Deleting some of the edit windows neither destroys the compile window nor the browsing windows. It requires the CEDET suite.
Thousand Parsec is a turn-based space empire building game, as well as a framework for creating a similar group of games, which are often called 4X games (eXplore, eXpand, eXploit, and eXterminate). Some examples of games from which Thousand Parsec draws ideas are Reach for the Stars, Stars!, VGA Planets, Master of Orion, and Galactic Civilizations. Unlike commercial alternatives, it is designed for long games supporting universes as large as your computer can handle. It allows a high degree of player customization, and features a flexible technology system where new technologies may be introduced mid-game.