ACL2 is a mathematical logic, programming language, and mechanical theorem prover based on the applicative subset of Common Lisp. It is an "industrial-strength" version of the NQTHM or Boyer/Moore theorem prover, and has been used for the formal verification of commercial microprocessors, the Java Virtual Machine, interesting algorithms, and so forth.
AMLET is software designed to estimate multinomial and mixed logit discrete choices models, which are increasingly popular in econometry. The software supports cross- sectional and panel data, and offers various optimization methods, including the new variable sample-size approach.
APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, implicit solvent molecular dynamics of biomolecules, solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, and biomolecular titration studies.
Apfp (Arbitrary Precision Floating Point) is a Ruby class for performing arbitrary precision floating point calculations. It also includes a class Apc for calculating with arbitrary precision complex numbers. It also contains a Real class for built-in reals. Both classes keep an estimate of the accumulated error.
ASCIIMathML is a script that converts calculator-style ASCII math notation (and many LaTeX formulas) to Presentation MathML while your Web page loads. It works with HTML and XHTML files in Mozilla/Firefox/Netscape 7+ browsers, as well as in Internet Explorer 6 with MathPlayer. For example, the solutions for the equation 'ax^2+bx+c=0' are expressed in the HTML file as '(-b +- sqrt(b^2 - 4ac))/(2a)', and display as nicely formatted MathML. The script can be easily used in wikiservers and blogs, as a rudimentary MathML editor (with instant preview), and to preview math formulas as they are typed into a Web page input area.
The ATLAS (Automatically Tuned Linear Algebra Software) project is an ongoing research effort focusing on applying empirical techniques in order to provide portable performance. It provides C and Fortran77 interfaces to a portably efficient BLAS implementation, as well as a few routines from LAPACK.
The Akaroa research project is aimed at improving the credibility of results from quantitative stochastic simulation using automated sequential analysis, and speeding up such simulations using Multiple Replications In Parallel (MRIP) to harness the computing power of a network of inexpensive workstations.