Esra is a scriptable, scalable, and highly hackable molecular mechanics library for Java. Its primary purpose is the statistical analysis of trajectory data generated with packages such as GROMOS, GROMACS, or AMBER, but it can also be used as a standalone package for performing simple molecular dynamics and Monte-Carlo simulations. It can be scripted with Jython, Mathematica, or Matlab.
FrAid (Fr[actal] Aid) is a programming language that is appropriate for mathematical computations, visualization, batch processing, and more. It features both a standalone application that provides a programming environment for the language and a system for integrating the language with Java. The Java interface allows mathematical equations and formulas to be used with Java code, making it easier to process numerical computations, symbolic computations, imaging, CAD, and more.
Ch is an embeddable C/C++ interpreter for cross-platform scripting, shell programming, 2D/3D plotting, numerical computing, and embedded scripting. It is the simplest solution to numerical computing and visualization in the domain of C/C++. It supports the ISO 1990 C Standard (C90), major features in C99 (complex numbers, variable length arrays or VLAs, type generic functions, long long data type, etc), classes in C++, and extensions to the C language like nested functions, string types, etc. It can be embedded in other applications and hardware and used as a scripting language. C/C++ code is interpreted directly with no compilation to intermediate code. It supports Linux, Windows, MacOS X, Solaris, HP-UX, and FreeBSD.