BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.
bkmrkconv will convert Netscape's bookmarks.html file into a series of interconnected HTML pages which can be put online. The pages are heavily customizable and examples are included for a Yahoo-like portal. The program is useful for accessing your bookmarks from a remote machine or even just for making your links look prettier.
Calc is arbitrary precision arithmetic system that uses a C-like language. It's useful as a calculator, an algorithm prototype, and as a mathematical research tool. More importantly, calc provides a machine-independent means of computation. Calc comes with a rich set of builtin mathematical and programmatic functions.