FrAid (Fr[actal] Aid) is a programming language that is appropriate for mathematical computations, visualization, batch processing, and more. It features both a standalone application that provides a programming environment for the language and a system for integrating the language with Java. The Java interface allows mathematical equations and formulas to be used with Java code, making it easier to process numerical computations, symbolic computations, imaging, CAD, and more.
The aim of ADF MAGE-ML Tool is to provide a module for converting ADF files (a tab delimited file representing microarray design layout) into MAGE-ML format, and for generating an ADF from an array design described in MAGE-ML format. The module is build upon the ADF specifications and using MAGE-Stk APIs (Java). MIAME-compliance checking, a logging system, and integration of LifeScience Identifier (LSID) specifications are key components of the module. The module can be used via the command line or a graphical user interface.
Program D is a widely used AIML bot platform. It is feature-complete and well-tested. It supports unlimited multiple bots in a single server instance, and has an open-ended architecture for interacting via any interface imaginable. The standard release provides a J2EE Web application implementation. Drop-in listeners are available for IRC, AIM, and Yahoo!. It includes an automated testing framework for testing knowledge bases, and is packaged with an AIML Test Suite that verifies that the program itself complies to the AIML specification.
RefSense is a set of command line tools for accessing PubMed. They allow you to search PubMed from a terminal (such as xterm), retrieve Web pages or PDFs, find related articles, convert to BibTeX, and much more by only using a keyboard. It also provides convenient word completion on titles, author names, etc.
Boolean Expression Solver is a commandline utility that generates a truth table for a given Boolean expression. It is written in Java, so it will run on any platform that has the Java runtime environment installed, but the makefile and shell-script included for convenience generally require *nix.