MathGL is a library for making high-quality scientific graphics under Linux and Windows, fast data plotting and handling of large data arrays, working in window and console modes, and easily embedding into other programs. It has more than 40 general types of graphics for 1d, 2d, and 3d data arrays. It can export graphics to raster and vector (EPS or SVG) formats. It has an OpenGL interface and can be used from console programs. It has functions for data handling and MGL language scripting for simplification of data plotting. It has several types of transparency and smoothed lightning, vector fonts and TeX-like formula drawing, an arbitrary curvilinear coordinate system, and many other useful things.
Visual Paradigm for UML is a Unified Modeling Language (UML) design tool that supports all UML diagrams, SysML diagrams, and entity relationship diagrams. Visual Paradigm for UML provides extensive use case modeling features, including full function UML use case diagram, flow of events editor, use case/actor grid, and activity diagram generation. Visual Paradigm for UML produces system documentation in PDF, HTML, and MS Word formats. A developer can design system documentation with the template designer. A system analyst can estimate the consequences of changes with impact analysis diagrams, such as matrix and analysis diagram. Visual Paradigm for UML generates Java code.
JGraphpad Pro is a complete application framework for rapid development of JGraph tools. It is meant for developers who wish to provide a stand-alone, rich-client graph application. The user interface is configurable with XML, and it uses a plugin architecture for extra functionality. It features a wide range of application components like palette, overview, the ability to export to many image and XML formats, copy and paste, drag and drop, rich text labels, database or backend connectivity, and visual complexity management. You can use it to create workflow editors, call graphs, CAD tools, network diagrams, database visualization tools, and more.
SDE for Eclipse is a UML modeling environment tightly integrated with Eclipse IDE. It lets you draw all types of UML diagrams (use case diagrams, class diagrams, component diagrams, etc.) in Eclipse, reverse source code (Java, C++, XML, XML Schema, CORBA IDL, etc.) to UML models, and generate Java source from UML diagrams. It features the latest UML notation support, a Rational Rose importer, an XMI importer, Microsoft Visio integration, HTML/PDF documentation generators, and plug-in and template support.
Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.
BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.