Visualization of Protein Ligand Graphs (VPLG) uses a graph-based model to describe the structure of proteins on the super-secondary structure level. A protein-ligand graph is computed from the atomic coordinates in a PDB file and the secondary structure assignments of the DSSP algorithm. In this graph, vertices represent secondary structure elements (SSEs, usually alpha helices and beta strands) or ligand molecules, while the edges model contacts and relative orientations between them. The graphs can be visualized, written to a database, and saved in a text-based file format.
JagPDF is a library for generating PDF documents in C/C++, Python, and Java. It supports TrueType (subsetting) and standard 14 Type 1 fonts, font metrics, Unicode, UTF-8 and common 8-bit character encodings, images (JPEG, PNG, or custom), paths, color spaces (RGB, CMYK, CIE based, ICC profiles, indexed), encryption, bookmarks, hyperlinks, and more.
Kalyp is a fantasy-based roguelike game written in Java. Its design is based on traditions set by popular roguelike games, especially Nethack. It is single player and runs in a text terminal. The project focuses mostly on the Artificial Intelligence engine for the non-player characters. Most of the game design will be done in scripting, as the core engine written in Java will handle user interface, rulesets, basic actions, and try to hold it all together.
nexB OpenAssets is a tool for inventorying, managing, and monitoring applications, software, hardware, networks, and generally any IT asset. It is designed so that system administrators, IT, and finance can determine what they have, how it is configured, what it is used for, and how much it is being used, so that informed decisions can be made. It complements existing network management software, integrates with a growing number of protocols and tools, and features no-agent discovery and inventory, configuration management including dependencies and correlation, monitoring, and reporting. It makes extensive and innovative use of XML, Xpath, and Xquery.
Fortools_dd is a set of forensic apps, created with zenity, for terminal commandos and bash scripts in Linux. It includes Mount_dd (a mounting images app), kijknekerap (a Dutch Terminal app), fgrep_dd (grep apps), convert_dd (a conversion app for aff > dd > EWF), shred_dd (a shredding app), filecopy_dd (a search-and-copy app), forensic_wine_dd (a Windows software with Wine app), reportmaker_dd (a small reportmaking app), Browserhistory_dd (a history app), and Offsetgrabber_dd (an offset viewing app).