ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
The LibXDiff library implements basic and yet complete functionalities to create file differences/patches to both binary and text files. It uses memory files as file abstraction to achieve both performance and portability. For binary files, it implements both (with some modification) the algorithm described in "File System Support for Delta Compression" by Joshua P. MacDonald and the algorithm described in "Fingerprinting By Random Polynomials" by Michael O. Rabin. For text files, it follows directives described in "An O(ND) Difference Algorithm and Its Variations" by Eugene W. Myers. Memory files used by the library are basically a collection of buffers that store the file content.
PHP Mobile Mail is aimed at mobile professionals who want to use their favorite MUAs (noteably pine or mutt) on their laptop, either in UNIX or Windows (under GNU Gygwin). This lets you work offline. It includes a mail_spooler program, which accepts the output of you MUA and spools (on, or offline). When connected, another process parses through the spool and sends your messages. It is also designed to "fake" using your REAL email address with free services like gmx.net, or mail.yahoo.com, when using their POP and SMTP servers, assuming you have a domain and account that you can control to this degree.