MPIBurn is an MPI unicast benchmark. Modern inter-connect hardware handles broadcast messages with a different algorithm than that used for unicast messages. Just benchmarking broadcasts or N to N+1 messaging may not detect inter-connect malfunctions, so MPIBurn benchmarks any possible unicast connection while assuring to involve as many connections in parallel as possible. After each round, the peers are scrambled to ensure that the next round has completely different connection groups.
OpenMPF is a library for solving large, dense, multi-RHS linear systems. It is based on MPI/openMP parallelism, and relies on BLAS/LAPACK/MUMPS for the single node computations. It implements direct and iterative solvers, out-of-core matrices and vectors, and is easily accessible through a Python interface.
Elemental is a C++ framework for distributed-memory dense linear algebra that strives to be fast, portable, and programmable. It can be thought of as a generalization of PLAPACK to element-by-element distributions that also makes use of recent algorithmic advances from the FLAME project. Elemental usually outperforms both PLAPACK and ScaLAPACK, however, it heavily relies on MPI collectives so a good MPI implementation is crucial. Both pure MPI and hybrid OpenMP-MPI configurations are supported.
The underling library provides simple, scalable means to manipulate MPI-parallel, three dimensional pencil decompositions using FFTW. Pencil decompositions are a natural way to distribute O(n^3) data across O(n^2) processors and are well-suited for memory-intensive, structured spectral turbulence simulations and postprocessing codes. It may be useful in other domains as well. The library is written in C99 and may be used by C89 or C++ applications.
Gfarm is a distributed filesystem, generally used for large scale cluster computing. It's implemented in userland, and can be mounted by FUSE. It utilizes locality of a file to access a data node, and supports Globus GSI for Wide Area Network. Users can explicitly control file replica location on Gfarm. Gfarm can be used as an alternative storage system to HDFS for Hadoop, Samba, MPI-IO, and GridFTP. Monitoring via ZABBIX and Ganglia is also supported.
astroPluto is modular Godunov-type code intended mainly for astrophysical applications and high Mach number flows in multiple spatial dimensions. The code embeds different hydrodynamic modules and multiple algorithms to solve the equations describing Newtonian, relativistic, MHD, or relativistic MHD fluids in Cartesian or curvilinear coordinates.
The Palabos library offers a framework in C++ for fluid flow simulations with the lattice Boltzmann (LB) method. Originally conceived as a research tool for lattice Boltzmann models, the code has evolved into a general-purpose program for computational fluid dynamics. The programming interface is straightforward and offers an access to the rich world of lattice Boltzmann, even to an audience with restricted theoretical knowledge of this method. A special emphasis is put on high performance and parallel computing.