MPIBurn is an MPI unicast benchmark. Modern inter-connect hardware handles broadcast messages with a different algorithm than that used for unicast messages. Just benchmarking broadcasts or N to N+1 messaging may not detect inter-connect malfunctions, so MPIBurn benchmarks any possible unicast connection while assuring to involve as many connections in parallel as possible. After each round, the peers are scrambled to ensure that the next round has completely different connection groups.
OpenMPF is a library for solving large, dense, multi-RHS linear systems. It is based on MPI/openMP parallelism, and relies on BLAS/LAPACK/MUMPS for the single node computations. It implements direct and iterative solvers, out-of-core matrices and vectors, and is easily accessible through a Python interface.
Gfarm is a distributed filesystem, generally used for large scale cluster computing. It's implemented in userland, and can be mounted by FUSE. It utilizes locality of a file to access a data node, and supports Globus GSI for Wide Area Network. Users can explicitly control file replica location on Gfarm. Gfarm can be used as an alternative storage system to HDFS for Hadoop, Samba, MPI-IO, and GridFTP. Monitoring via ZABBIX and Ganglia is also supported.
The 2DECOMP&FFT library is a software framework in Fortran to build large-scale parallel applications. It is designed for applications using three-dimensional structured mesh and spatially implicit numerical algorithms. At the foundation, it implements a general-purpose 2D pencil decomposition for data distribution on distributed-memory platforms. On top, it provides a highly scalable and efficient interface to perform three-dimensional distributed FFTs.
The underling library provides simple, scalable means to manipulate MPI-parallel, three dimensional pencil decompositions using FFTW. Pencil decompositions are a natural way to distribute O(n^3) data across O(n^2) processors and are well-suited for memory-intensive, structured spectral turbulence simulations and postprocessing codes. It may be useful in other domains as well. The library is written in C99 and may be used by C89 or C++ applications.