BioJava aims to provide a comprehensive set of Java components for the rapid development of applications in Bioinformatics. It contains interfaces for representing Sequences, Features, and other important bioinformatics concepts. It can also read and write sequence data in a variety of common formats and communicate with Ensembl databases and with DAS and BioCorba servers.
C-XSC 2.0 is a C++ class library for eXtended Scientific Computing. It provides real, complex, interval, complex-interval, and multi-precision data types. There are also vector and matrix classes corresponding to these scalar types. The interval data types are very useful for verified numerical computations.
Calc is arbitrary precision arithmetic system that uses a C-like language. It's useful as a calculator, an algorithm prototype, and as a mathematical research tool. More importantly, calc provides a machine-independent means of computation. Calc comes with a rich set of builtin mathematical and programmatic functions.
CCMATH is a mathematics library, coded in C, that contains functions for linear algebra, numerical integration, geometry and trigonometry, curve fitting, roots and optimization, Fourier analysis, simulation generation, statistics, special functions, sorts and searches, time series models, complex arithmetic, and high precision computations.
CwMtx is a library written in C++ that provides the matrix and vector operations that are used extensively in engineering and science problems. A special feature of this library is the quaternion class which implements quaternion math. Quaternions are very useful for attitude determination in 3D space because they do not suffer from singularities. Furthermore, successive rotations and transformations of vectors can be accomplished by simple quaternion multiplication. Attitude dynamics can be expressed in a very compact form using quaternions
distributed.net is a loosely knit group of computer users from all of the world that is taking up challenges requiring lots of computing power (most notably the RC5, DES, and OGR cracking contests). It is simple to participate in the challenges by downloading and running their client software (which uses idle CPU time to complete its tasks).
Genius is an arbitrary precision integer and multiple precision floating point calculator. It includes its own programming language similar in some aspects to C, bc, or Pascal. It can deal with rational numbers and complex numbers. It has matrix support as well. It uses the gmp library so it is very fast for calculations of large numbers. It has a command line and a GNOME interface. The GNOME interface supports plotting functions and 3D surfaces.
GLE (Graphics Layout Engine) is a graphics scripting language designed for creating publication quality figures (e.g., a chart, plot, graph, or diagram). GLE supports various chart types (including function plot, histogram, bar chart, scatter plot, contour plot, color map, and surface plot) through a simple but flexible set of graphing commands. More complex output can be created by relying on GLE's scripting language, which is full featured with subroutines, variables, and logic control. GLE relies on LaTeX for text output and supports mathematical formulae in graphs and figures.
Gnofract 4D is a Gnome-based program to draw fractals. What sets it apart from other fractal programs (and makes it "4D") is the way that it treats the Mandelbrot and Julia sets as different views of the same four-dimensional fractal object. It contains a Fractint-compatible formula compiler, allowing it to draw an unlimited number of fractal types, using numerous coloring options.
The GNU Triangulated Surface Library (GTS) provides a set of useful functions to deal with 3D surfaces meshed with interconnected triangles. It features metric operations (area, volume, curvature, etc.), 2D Delaunay and constrained Delaunay triangulations, robust geometric predicates and set operations on surfaces (union, intersection, etc.), surface refinement and coarsening (multiresolution models), and bounding-boxes trees for collision/intersection detection.