The Scalable Assembler at Notre Dame (SAND) replaces the early stages of the Celera Assembler with scalable versions that can run on collections of commodity computers. By harnessing clusters, clouds, grids, or just random machines in your office, many bioinformatics tasks can be reduced from weeks or months down to minutes or hours.
CRest (Client REST) is a lightweight library that simplifies the integration of third party RESTful services into Java applications. CRest is mainly annotation-driven, allowing the developer to focus on the essential aspects of the integration of a REST service, such as the definition of the Java interface that maps the remote REST methods and the data model the interface will deal with. The rest is achieved by annotating a plain Java interface with the relevant information such as the service end-point, the desired timeouts, URL formats, etc. CRest will handle everything else, including HTTP request generation, auto marshalling of the response, and more.
The OATH Toolkit makes it easy to build one-time password authentication systems. It contains shared libraries, commandline tools, and a PAM module. Supported technologies include the event-based HOTP algorithm (RFC4226) and the time-based TOTP algorithm (RFC6238). OATH stands for Open AuTHentication, which is the organization which specifies the algorithms. For managing secret key files, the Portable Symmetric Key Container (PSKC) format described in RFC6030 is supported.
Janus is a platform designed to deal with the implementation and deployment of holonic and multi-agent systems. It is based on the CRIO organizational metamodel. The concepts of role and organization are supported as first-class entities. Janus provides a comprehensive set of features for developing, running, displaying, and monitoring multi-agent-based applications. The platform also natively manages the concept of recursive agents (holon or agents composed of agents). It can also run threaded and non-threaded agents without using the organizational and holonic API. It provides features equivalent to those of TinyMAS or MadKit.