db4o is an object database for Java and all .NET environments. Its features include ACID transactions, automatic class schema recognition, query-by-example, a S.O.D.A. object querying API, native queries, LINQ support on .NET, callback methods, memory files, cascade-on-delete, multi-threaded access, and Java Webstart and servlet support.
Jmol is a Free, Open Source molecule viewer and editor. It is a collaboratively developed visualization and measurement tool for chemical scientists. Jmol is an active project, and there are new features being added to it on a daily basis. Users are encouraged to modify it to fit their needs and to contribute their changes to the project.
MUSCLE (Multi User Server Client Linking Environment) is an N-way messaging server and networking API. It includes client-side networking APIs for various languages, including C, C++, C#, Delphi, Java, and Python. MUSCLE lets programs communicate over a network via streams of serialized Message objects. The included server program ("muscled") lets its clients message each other and store information in its server-side hierarchical database. The database supports flexible queries via hierarchical wildcarding, and "live" updates via a subscription mechanism.
The Oculus Layout System supplies a Java layout API, and an easy-to-use visual builder, which works with both Swing and AWT. Main features include a proprietary stretching model, which enables the system to automatically infer how to properly stretch almost any user interface, and a cursor-based layout paradigm which dramatically improves the readability and maintainability of the layout code.
FireStorm/DAO is a Java Code Generator that can import existing database schemas (from a SQL script or from a live JDBC connection) and can then generate a complete persistence tier. It generates Java source code and configuration files that developers would otherwise have to write by hand, and that is compliant with the Data Access Object (DAO) design pattern.