Calc is arbitrary precision arithmetic system that uses a C-like language. It's useful as a calculator, an algorithm prototype, and as a mathematical research tool. More importantly, calc provides a machine-independent means of computation. Calc comes with a rich set of builtin mathematical and programmatic functions.
BRL-CAD is a powerful constructive solid geometry solid modeling system that includes an interactive geometry editor, ray-tracing support for rendering and geometric analysis, path-tracing for realistic image synthesis, network distributed framebuffer support, and image and signal-processing tools.
Jmx4Perl provides an alternate way of accessing Java JEE Server management interfaces that are based on JMX (Java Management Extensions). It is an agent-based approach where a small Web application deployed on the application server provides HTTP/JSON-based access to JMX MBeans registered within the application server. It is set up from a handful of Perl modules, which can be integrated seamlessly in your own programs. It also includes a Nagios plugin, check_jmx4perl, a jmx4perl command line tool for remote JMX queries and operations, and a readline-based JMX shell j4psh, with context sensitive command completion and syntax highlighting.
libGlass is a scalable set of components that can be used by applications to perform distributed computing. Applications are built by reusing the available components as needed. One of the major goals of Glass is to be a user-friendly framework, not only suitable for new applications, but also for legacy code. This is an important feature, as most available solutions for distributed computing require a substantial amount of rewrite of legacy code.
PVM (Parallel Virtual Machine) is a portable message-passing programming system, designed to link separate host machines to form a ``virtual machine'' which is a single, manageable computing resource. The virtual machine can be composed of hosts of varying types, in physically remote locations. PVM applications can be composed of any number of separate processes, or components, written in a mixture of C, C++ and Fortran. The system is portable to a wide variety of architectures, including workstations, multiprocessors, supercomputers and PCs.
Schedule::Cron is a Perl module that provides a simple but complete cron-like scheduler. It can be used for periodically executing Perl subroutines. The philosophy behind Schedule::Cron is to call subroutines periodically from within one single Perl program instead of letting cron trigger several (possibly different) Perl scripts. Everything under one roof. Furthermore, Schedule::Cron provides a mechanism to create crontab entries dynamically, which isn't that easy with cron. It knows about all extensions (at least all extensions the author is aware of, i.e those of "Vixie" cron) for crontab entries like ranges including 'steps', specification of month and days of the week by name, or coexistence of lists and ranges in the same field. It even supports a bit more (like lists and ranges with symbolic names). It has existed since 1999 on CPAN and is successfully used in many projects.
sml/nj (Standard ML of New Jersey) consists of a compiler, compilation manager, and libraries for Standard ML. Included are CML (Concurrent ML) and eXene (a toolkit for X based on CML). The compiler produces efficient code for most popular architectures (Intel x86, Sparc, Alpha, Mips, HP-PA, PowerPC) and runs under Unix, Linux, or Windows (95,98,NT).
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
The Snack sound extension adds commands for sound play/record and sound visualization, e.g. waveforms and spectrograms. It supports in- memory sound objects, file based audio, streaming audio, WAV, AU, AIFF, and MP3 file formats, synchronous and asynchronous playback. The visualization canvas item types update in real-time and can output postscript. New commands and file formats can be added using the Snack C-API.