ACL2 is a mathematical logic, programming language, and mechanical theorem prover based on the applicative subset of Common Lisp. It is an "industrial-strength" version of the NQTHM or Boyer/Moore theorem prover, and has been used for the formal verification of commercial microprocessors, the Java Virtual Machine, interesting algorithms, and so forth.
APBS is a software package for the numerical solution of the Poisson-Boltzmann equation (PBE), one of the most popular continuum models for describing electrostatic interactions between molecular solutes in salty, aqueous media. Continuum electrostatics plays an important role in several areas of biomolecular simulation, including simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, implicit solvent molecular dynamics of biomolecules, solvation and binding energy calculations to determine ligand-protein and protein-protein equilibrium binding constants and aid in rational drug design, and biomolecular titration studies.
ASCIIMathML is a script that converts calculator-style ASCII math notation (and many LaTeX formulas) to Presentation MathML while your Web page loads. It works with HTML and XHTML files in Mozilla/Firefox/Netscape 7+ browsers, as well as in Internet Explorer 6 with MathPlayer. For example, the solutions for the equation 'ax^2+bx+c=0' are expressed in the HTML file as '(-b +- sqrt(b^2 - 4ac))/(2a)', and display as nicely formatted MathML. The script can be easily used in wikiservers and blogs, as a rudimentary MathML editor (with instant preview), and to preview math formulas as they are typed into a Web page input area.
The ATLAS (Automatically Tuned Linear Algebra Software) project is an ongoing research effort focusing on applying empirical techniques in order to provide portable performance. It provides C and Fortran77 interfaces to a portably efficient BLAS implementation, as well as a few routines from LAPACK.
CONSIDEO MODELER allows you to mindmap a complex problem, analyse it qualitatively to discover levers and bottlenecks, and even to simulate it by automatically building a system dynamics model. One can integrate any external data and setup a customized management cockpit for playing out scenarios. It is useful for organizational problems, project management, financial analysis, production processes, score cards, and much more.
Cactus is a general, modular, parallel environment for solving systems of partial differential equations. The code has been developed over many years by a large international collaboration of numerical relativity and computational science research groups and can be used to provide a portable platform for solving any system of partial differential equations.
Calcoo is a scientific calculator designed to provide maximum usability. Its features bitmapped button labels and display digits to improve readability, no double-function buttons, undo/redo buttons, copy/paste interaction with the clipboard, both RPN and algebraic modes, two memory registers with displays, displays for Y, Z, and T registers, and tick marks to separate thousands. Calcoo is written in C using the GTK+ widget library (v.2.2+).
DigitizeIt digitizes scanned graphs and charts. Graphs can be loaded in nearly all common image formats (including gif, tiff, jpeg, bmp, png, psd, pcx, xbm, xpm, tga, pct), pasted from the clipboard, or imported via a screenshot. Digitizing of line and scatter plots occurs automatically, and manual digitizing via mouse clicks is also possible. Data values are transformed to a specified axes system and can be saved in ASCII format, ready to use in many other applications such as Microcal Origin or Excel. Axes can be linear, logarithmic, or reciprocal scale. Multiple data sets can be defined and edited. Tilted and distorted graphs can be handled. Comprehensive online help is included. Java 1.4 is required.