The MirBSD Korn Shell (mksh) is an actively developed successor of pdksh (the Public Domain Korn Shell), aimed at producing a shell good for interactive use, but with the primary focus on scripting. It is intended to be portable to most *nix-like operating systems as long as they're not too obscure. mksh incorporates improvements from OpenBSD and Debian, as well as bugfixes and enhancements developed for the MirOS, FreeWRT, and MidnightBSD projects and Android. The emacs command line editing mode is UTF-8 capable, and Byte Order Marks are ignored in scripts. The shell supports large files, as well as all pdksh and some csh, AT&T ksh, zsh, and GNU bash features, is compatible with the Bourne shell and POSIX (within limits), has no limit on array sizes, and incorporates some other useful builtins and features. While being already fast and small (without losing functionality), flags to make it even smaller can be given at compile time. An interactive shell reads "~/.mkshrc" on startup.
Trojan scan is a simple shell script that allows for simple but relatively effective checking for trojans, rootkits and other malware that may be using your server and network for unwanted (and possibly illegal) purposes. It works by listing all processes that use the Internet with the lsof command (using -Pni flags). This list is then transformed into signatures in the form of process_name:port_number:user. These signatures then are matched against the allowed process defined in the configuration. If any signatures of running processes are found that do not match the allowed signatures, an email report is sent including ps, ls, and optional lsof output.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
Moab Workload Manager is a High Performance Computing (HPC) resource management and job scheduler. It is designed and developed by the same developers as the popular Maui Scheduler, and it provides the same powerful cluster scheduling capabilities with the addition of events, resources, and grid policy engines.
cw is a non-intrusive real-time ANSI color wrapper for common Unix-based commands. It is designed to simulate the environment of the commands being executed, so that if a person types 'du', 'df', 'ping', etc. in their shell it will automatically color the output in real-time according to a definition file containing the color format desired. It has support for wildcard match coloring, tokenized coloring, headers/footers, case scenario coloring, command-line- dependent definition coloring, and includes over 50 pre- made definition files.
GNOME Schedule is a system schedule maintenance tool. It has support for the cron and at scheduling systems. It aims to be as HIG compatible as possible. The target is to provide any sane desktop user with a tool to maintain the scheduling of his or her desktop tasks, while not requiring an understanding of the cron or at subsystems.