Biomechanical ToolKit (BTK) is a cross-platform library for biomechanical analysis. It can read and write a large variety of file formats used in biomechanics, and can modify them. All these operations can be done with the C++ API or with the wrappers included (Python, Octave, and Matlab). The goal of this project is to help the community share data without the restriction of the file format or the biomecanical model provided by the manufacturer of the acquisition system.
iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.
The Common Pipeline Library provides a highly robust set of functions for manipulating signals and images. It is primarily intended for the building of VLT instrument pipelines, but is also useful for generic data handling. It includes a number of useful low-level data types, medium-level data access methods, standard implementations of commonly-used signal processing and data reduction tasks, and dynamic loading of "recipes" for data processing.
SHTns is a high-performance Spherical Harmonic Transform library. It was designed for numerical simulation (fluid flows, mhd, etc.) in spherical geometries, but can be used for any kind of problem involving scalar or vector spherical harmonics. It is very fast, thanks to careful vectorization and runtime tuning. It supports multi-threaded transforms via OpenMP. It features scalar and vector transforms, synthesis and analysis, and flexible truncation and normalization. A Python interface is included.
MakeHuman is software for the modelling of three-dimensional humanoid characters. Features that make this software unique include a highly intuitive GUI and a high quality mesh, optimized to work in subdivision surface mode (for example, Zbrush). Using MakeHuman, a photo-realistic character can be modelled in less than 2 minutes.
Gerbil consists of an interactive visualization tool targeted at multispectral and hyperspectral image data, and a toolbox of common algorithms, e.g. for segmentation. Multispectral imaging has been gaining popularity and has been gradually applied to many fields besides remote sensing. However, due to the high dimensionality of the data, both human observers and computers have difficulty interpreting this wealth of information. Gerbil facilitates the visualization of the relationship between spectral and topological information in a novel fashion. It puts emphasis on the spectral gradient, which is shown to provide enhanced information for many reflectance analysis tasks. It also includes a rich toolbox for evaluation of image segmentation and other algorithms in the multispectral domain. The parallel coordinates visualization technique is combined with hashing for a highly interactive visual connection between spectral distribution, spectral gradient, and topology.
Sally is a tool for mapping a set of strings to a set of vectors. This mapping is referred to as embedding and allows techniques of machine learning and data mining to be applied for the analysis of string data. It can be used with data such as text documents, DNA sequences, or log files. The vector space model or bag-of-words model is used. Strings are characterized by a set of features, where each feature is associated with one dimension of the vector space. Occurrences of the features in each string are counted. Alternatively, binary or TF-IDF values can be computed. Vectors can be output in plain text, LibSVM, or Matlab format.
GPlates offers a novel combination of interactive plate-tectonic reconstructions, geographic information system (GIS) functionality, and raster data visualization. GPlates enables both the visualization and the manipulation of plate-tectonic reconstructions and associated geological, geophysical, and paleo-geographic data through geological time.