VRaptor 2 is a Web-based MVC and IOC framework based on many frameworks and ideas (Seam, Stripes, Webwork, Hibernate Annotations, etc). It makes full use of Java 5 Annotations. It favors convention over configuration, because configuration in XML/properties/annotations is always easy to make mistakes and repetitive (aka copy and paste in many places). This framework uses a more imperative approach, instead of having many XML files to configure lifecycle and other properties. Most of the settings go inside plain Java objects (POJO), so the team knows exactly what is going on and where.
JChassis TermUI is an API for simple GUI-like user interfaces on ANSI/VT100-compliant terminals and terminal emulators, such as Linux virtual terminals, GNOME Terminal, and KDE Konsole. The intent is similar to that of the ncurses library, but done in pure Java. Several commonly used widgets are available.
ProteomeCommons.org IO Framework is a proper Java framework for handling spectra and peak lists. The framework can read and write to a number of different spectra and peak list formats, and it provides a simple, intuitive Java object model for working with spectra or peak lists. All classes support two methods of handling peak list and spectrum data: in-memory or stream. The goal of this framework is to support all the popular MS and MSMS data formats, and to eliminate any time or effort involved in figuring out how to read and write peak list or spectrum files.
JChassis ANSI Terminal Controller is a Java API for controlling ANSI-compliant terminals and terminal emulators such a Linux virtual terminals, xterm, Gnome Terminal, and KDE Konsole. The library can be used to display character styles and colors and graphical characters in those environments. It is a repackaging of various JChassis modules into a standalone library that does not require the JChassis SDK or framework.
naarani Personal Access is a Java library to run programs that need to create, design, and access a MySQL database. It features automated managment of user rights, SQL code, table updates/track, data input/user masks, and a plugin to quickly add menu/custom fields management. Table and modules (masks) can be created or updated while debugging (even inside Eclipse) without reloading the program.
The zen Platform is a Java development environment for J2SE/J2EE. It eases and accelerates the Java application development by visual methods (RAD). Complete applications can be modelled in an intuitive fashion without the need for technical expertise. The complexity of Java and J2EE programming is tremendously hidden - reducing the learning curve for Java novices. Java experts are by no means restricted - they may apply their knowledge without limitations. Application flexibility is a core feature of the platform, which is delivered as an Eclipse plugin.
The IberAgents platform is a framework for component development in Java. It has facilities for Web service communication (SOAP), persistence to database or files, and interaction via the Web; thus providing an end-to-end solution for data management. It uses its own SOAP library, so it does not depend on Axis or Apache Soap.