iNA is a computational tool for quantitative analysis of fluctuations in biochemical reaction networks. Such fluctuations, also known as intrinsic noise, arise due to the stochastic nature of chemical reactions and cannot be ignored for when some molecules are present only in very low copy numbers as is the case in living cells. The SBML-based software computes statistical measures such as means and standard deviations of concentrations within a given accuracy using the analytical system size expansion. The result of iNA’s analysis can be tested against the computationally much more expensive stochastic simulation algorithm.
The Common Pipeline Library provides a highly robust set of functions for manipulating signals and images. It is primarily intended for the building of VLT instrument pipelines, but is also useful for generic data handling. It includes a number of useful low-level data types, medium-level data access methods, standard implementations of commonly-used signal processing and data reduction tasks, and dynamic loading of "recipes" for data processing.
GPlates offers a novel combination of interactive plate-tectonic reconstructions, geographic information system (GIS) functionality, and raster data visualization. GPlates enables both the visualization and the manipulation of plate-tectonic reconstructions and associated geological, geophysical, and paleo-geographic data through geological time.
Bayon is a simple and fast data clustering tool for large-scale data sets. If you want to survey large-scale data, bayon is useful to partition the data into some groups and understand it. Bayon supports two hard-clustering methods, repeated bisection clustering, and K-means clustering. In the outputs of these methods, each input document is assigned to only one cluster. But you can get similar clusters for each input document like soft-clustering method by using some options.
SynScope is an offline visualization and alignment tool for time-varying signals acquired from multiple sources that may differ in offset and/or sample rate. SynScope allows you to define reference points that correspond to identical events between source pairs. It then estimates the offset and resample rate to link these sources. It maps sample time from one source to the other via a link equation. Signal alignment can be inspected with synchronous visualization or resampling. With synchronous visualization, linked signals scroll together according to the link relation. With resampling, linked signals are resampled to the highest sample rate and offset-compensated.
The rt-stepper project provides a USB CNC controller solution. Most CNC controllers are designed to be driven with a PC parallel port. The rt-stepper solution replaces the parallel port with USB. Users can convert their existing parallel port CNC controller into a USB CNC controller. Designers can integrate the hardware into there own CNC controller. The PC side software is based on the popular EMC2 software at www.linuxcnc.org. EMC2 provides 4-axis support, a complete gcode interpreter, a trajectory planner, a GUI front-end, backplotting, and more. The best part of the solution is since the rt-stepper hardware provides the real time step pulses, you can now run EMC2 on Linux, Mac OS, and Windows.
Voreen is a rapid application development framework for the interactive visualization and analysis of multi-modal volumetric data sets. It provides GPU-based volume rendering and data analysis techniques and offers high flexibility when developing new analysis workflows in collaboration with domain experts. The Voreen framework consists of a multi-platform C++ library, which can be easily integrated into existing applications, and a Qt-based stand-alone application.
Algraeph is a tool for manual alignment of linguistic graphs, such as phrase structure trees or dependency structures, where each node corresponds to a subsequence of the analyzed input sentence. It allows you to express the similarity between two graphs by aligning their nodes and attaching relation labels to these alignments. Graphs are read from one or more graphbanks (or treebanks) in the GraphML or Alpino formats. Alignment relations are user-defined and are stored in a simple XML format, which can be used for further processing. The resulting parallel graph corpus is a useful data set for many tasks in computational linguistics and natural language processing.