LabKey Server is open source software that helps scientists manage, analyze, and share complex datasets. It supports tandem mass spectrometry, flow cytometry, assays for neutralizing antibodies, Luminex, observational studies, and secure, Web-based collaboration. The software is modular, configurable, and customizable. It can be installed in your institution on any modern hardware and operating system. It is designed to integrate with your existing systems, instruments, and work flows, and to be readily adapted by skilled programmers to novel methods of inquiry. The project is under active development by a team of professional software engineers and a community of active contributors. New versions are released about four times per year.
Athena Framework for Java is a full fledged enterprise object-relational mapping (ORM) framework that employs metadata as mapping configuration. It greatly simplifies Java Web application development by removing the requirement of manual mapping and manual database schema updating. In addition to features like Java object persistence, powerful EJBQL querying execution, and comprehensive code generation, Athena has built-in support for multi-tenancy, which enables developers to build cloud applications easily. Athena can be easily integrated with other libraries like Struts or Spring to provide full stacks of service.
PyroScope is a collection of tools for the BitTorrent protocol and especially the rTorrent client. "pyrocore" is the component providing command line tools for automation of common tasks, like metafile creation, and controlling rTorrent via its XML-RPC interface. It also offers a documented API, with which these tools are implemented.
VectorGraphics2D can export Java painting operations to Encapsulated PostScript (EPS), Scalable Vector Graphics (SVG), or Portable Document Format (PDF) files. It supports the rendering of all geometric shapes provided by the Java language. More advanced features like transparency or clipping paths can be used as well. It has a very small footprint and can be easily used as a replacement for Java's java.awt.Graphics2D class.
GRAL is a library for creating high quality plots and charts in Java. Many plot types are available like scatter plot, bubble plots, line plots, area plots, pie charts, and bar charts. Additionally, GRAL can exchange and process data (smoothing), and various plug-ins allow the import and export of data and graphics to formats like CSV, JPEG, PNG, EPS, PDF, or SVG.